Gene name: SSH4
Reference locus (S288C): YKL124W
Gene biotype: protein_coding
Description: Protein SSH4; Specificity factor required for Rsp5p-dependent ubiquitination; also required for sorting of cargo proteins at the multivesicular body; identified as a high-copy suppressor of a SHR3 deletion, increasing steady-state levels of amino acid permeases
Top 10 interactors (score): GID7 (0.922); TUL1 (0.845); RSP5 (0.843); SHR3 (0.83); TRE1 (0.755); YPQ1 (0.749); COT1 (0.721); YMR103C (0.71); YBR013C (0.71); RCR2 (0.699); PIB1 (0.699); YPL162C (0.697); BSD2 (0.695); RMD5 (0.693); YPQ2 (0.65); FYV10 (0.648); PMU1 (0.614); VPS27 (0.605); TRA1 (0.598); VPH1 (0.59)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:197168-198907:+ | gene-YKL124W_AKU4011 | rna-NM_001179690.1_AKU4011 | cds-NP_012798.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:174287-176026:+ | gene-YKL124W_BG1 | rna-NM_001179690.1_BG1 | cds-NP_012798.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:215079-216818:+ | gene-YKL124W_Bruggeman | rna-NM_001179690.1_Bruggeman | cds-NP_012798.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:210133-211872:+ | gene-YKL124W_CAT1 | rna-NM_001179690.1_CAT1 | cds-NP_012798.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:209401-211140:+ | gene-YKL124W_CBS1585 | rna-NM_001179690.1_CBS1585 | cds-NP_012798.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:207985-209724:+ | gene-YKL124W_CBS436 | rna-NM_001179690.1_CBS436 | cds-NP_012798.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:194029-195768:+ | gene-YKL124W_CBS6412 | rna-NM_001179690.1_CBS6412 | cds-NP_012798.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:209864-211603:+ | gene-YKL124W_CBS6413 | rna-NM_001179690.1_CBS6413 | cds-NP_012798.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:210234-211973:+ | gene-YKL124W_CENPK1137D | rna-NM_001179690.1_CENPK1137D | cds-NP_012798.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:207898-209637:+ | gene-YKL124W_EthanolRed | rna-NM_001179690.1_EthanolRed | cds-NP_012798.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:208711-210450:+ | gene-YKL124W_FaliES1 | rna-NM_001179690.1_FaliES1 | cds-NP_012798.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000357.1:31006-32745:+ | gene-YKL124W_JAY291 | rna-NM_001179690.1_JAY291 | cds-NP_012798.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:216900-218639:+ | gene-YKL124W_MUCL30387 | rna-NM_001179690.1_MUCL30387 | cds-NP_012798.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:211271-213010:+ | gene-YKL124W_MUCL30388 | rna-NM_001179690.1_MUCL30388 | cds-NP_012798.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:209194-210933:+ | gene-YKL124W_MUCL39482 | rna-NM_001179690.1_MUCL39482 | cds-NP_012798.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:213566-215305:+ | gene-YKL124W_MUCL42920 | rna-NM_001179690.1_MUCL42920 | cds-NP_012798.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:210582-212321:+ | gene-YKL124W_NCIM3186 | rna-NM_001179690.1_NCIM3186 | cds-NP_012798.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:209375-211114:+ | gene-YKL124W_NCYC1407 | rna-NM_001179690.1_NCYC1407 | cds-NP_012798.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:216473-218212:+ | gene-YKL124W_PE2H3 | rna-NM_001179690.1_PE2H3 | cds-NP_012798.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:212761-214500:+ | gene-YKL124W_PE2H4 | rna-NM_001179690.1_PE2H4 | cds-NP_012798.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:210593-212332:+ | gene-YKL124W_S288C | rna-NM_001179690.1_S288C | cds-NP_012798.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:126713-128452:+ | gene-YKL124W_SA1 | rna-NM_001179690.1_SA1 | cds-NP_012798.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:209411-211150:+ | gene-YKL124W_ThermosaccDry | rna-NM_001179690.1_ThermosaccDry | cds-NP_012798.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:208724-210463:+ | gene-YKL124W_VR1 | rna-NM_001179690.1_VR1 | cds-NP_012798.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:207942-209681:+ | gene-YKL124W_ZTW1 | rna-NM_001179690.1_ZTW1 | cds-NP_012798.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:225481-227202:+ | gene-YKL124W_Sparadoxus | rna-NM_001179690.1_Sparadoxus | cds-NP_012798.1_Sparadoxus | 90.1 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |