Gene name: SSH1
Reference locus (S288C): YBR283C
Gene biotype: protein_coding
Description: Subunit of the Ssh1 translocon complex; Sec61p homolog involved in co-translational pathway of protein translocation; not essential
Top 10 interactors (score): SBH2 (0.999); SEC61 (0.999); SSS1 (0.998); SBH1 (0.997); SEC63 (0.987); RPL25 (0.981); RPL26A (0.97); RPL5 (0.968); KAR2 (0.966); RPL35A (0.958); RPL35B (0.955); RPL17A (0.951); ERV29 (0.947); YBR287W (0.94); CNE1 (0.933); RPL4B (0.929); LHS1 (0.928); HUT1 (0.925); SFB3 (0.92); WBP1 (0.912)
Homologues (species, bitscore): SEC61A1 (Homo sapiens, 238.8); Sec61a1 (Mus musculus, 238.8); sec61a1 (Danio rerio, 235.3); sec61a1 (Xenopus tropicalis, 240.0); Sec61alpha (Drosophila melanogaster, 229.9); sec-61 (Caenorhabditis elegans, 235.3); AT1G29310 (Arabidopsis thaliana, 241.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:753241-754713:- | gene-YBR283C_AKU4011 | rna-NM_001178631.1_AKU4011 | cds-NP_009842.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:124237-125709:- | gene-YBR283C_BG1 | rna-NM_001178631.1_BG1 | cds-NP_009842.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:754376-755848:- | gene-YBR283C_Bruggeman | rna-NM_001178631.1_Bruggeman | cds-NP_009842.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:758102-759574:- | gene-YBR283C_CAT1 | rna-NM_001178631.1_CAT1 | cds-NP_009842.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:744807-746279:- | gene-YBR283C_CBS1585 | rna-NM_001178631.1_CBS1585 | cds-NP_009842.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:751224-752696:- | gene-YBR283C_CBS436 | rna-NM_001178631.1_CBS436 | cds-NP_009842.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:839422-840894:- | gene-YBR283C_CBS6412 | rna-NM_001178631.1_CBS6412 | cds-NP_009842.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:750856-752328:- | gene-YBR283C_CBS6413 | rna-NM_001178631.1_CBS6413 | cds-NP_009842.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:762843-764315:- | gene-YBR283C_CENPK1137D | rna-NM_001178631.1_CENPK1137D | cds-NP_009842.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:876278-877750:- | gene-YBR283C_EthanolRed | rna-NM_001178631.1_EthanolRed | cds-NP_009842.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:769625-771097:- | gene-YBR283C_FaliES1 | rna-NM_001178631.1_FaliES1 | cds-NP_009842.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:32993-34465:+ | gene-YBR283C_JAY291 | rna-NM_001178631.1_JAY291 | cds-NP_009842.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:756419-757891:- | gene-YBR283C_MUCL30387 | rna-NM_001178631.1_MUCL30387 | cds-NP_009842.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:773501-774973:- | gene-YBR283C_MUCL30388 | rna-NM_001178631.1_MUCL30388 | cds-NP_009842.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:743114-744586:- | gene-YBR283C_MUCL39482 | rna-NM_001178631.1_MUCL39482 | cds-NP_009842.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:752963-754435:- | gene-YBR283C_MUCL42920 | rna-NM_001178631.1_MUCL42920 | cds-NP_009842.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:768740-770212:- | gene-YBR283C_NCIM3186 | rna-NM_001178631.1_NCIM3186 | cds-NP_009842.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:745004-746476:- | gene-YBR283C_NCYC1407 | rna-NM_001178631.1_NCYC1407 | cds-NP_009842.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:768102-769574:- | gene-YBR283C_PE2H3 | rna-NM_001178631.1_PE2H3 | cds-NP_009842.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:765778-767250:- | gene-YBR283C_PE2H4 | rna-NM_001178631.1_PE2H4 | cds-NP_009842.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:768943-770415:- | gene-YBR283C_S288C | rna-NM_001178631.1_S288C | cds-NP_009842.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:124057-125529:- | gene-YBR283C_SA1 | rna-NM_001178631.1_SA1 | cds-NP_009842.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:768617-770089:- | gene-YBR283C_ThermosaccDry | rna-NM_001178631.1_ThermosaccDry | cds-NP_009842.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:748802-750274:- | gene-YBR283C_VR1 | rna-NM_001178631.1_VR1 | cds-NP_009842.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:741459-742931:- | gene-YBR283C_ZTW1 | rna-NM_001178631.1_ZTW1 | cds-NP_009842.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:785317-786789:- | gene-YBR283C_Sparadoxus | rna-NM_001178631.1_Sparadoxus | cds-NP_009842.1_Sparadoxus | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |