Gene name: SSF2
Reference locus (S288C): YDR312W
Gene biotype: protein_coding
Description: Ribosome biogenesis protein SSF2; Protein required for ribosomal large subunit maturation; functionally redundant with Ssf1p; member of the Brix family; SSF2 has a paralog, SSF1, that arose from the whole genome duplication
Top 10 interactors (score): DRS1 (0.998); EBP2 (0.998); RPF1 (0.993); RRP15 (0.992); NSA1 (0.991); NOP15 (0.99); CBF5 (0.988); NOP4 (0.986); RRP12 (0.981); RRP14 (0.98); CIC1 (0.975); MRT4 (0.974); RRS1 (0.973); SPB1 (0.972); NOP7 (0.972); MAK16 (0.968); NOP16 (0.966); NOP12 (0.966); DBP10 (0.965); RPF2 (0.963)
Homologues (species, bitscore): PPAN-P2RY11 (Homo sapiens, 223.0); Ppan (Mus musculus, 230.3); ppan (Danio rerio, 237.3); ppan (Xenopus tropicalis, 228.4); ppan (Drosophila melanogaster, 189.1); lpd-6 (Caenorhabditis elegans, 163.3); PPAN (Arabidopsis thaliana, 178.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1039569-1040930:+ | gene-YDR312W_AKU4011 | rna-NM_001180620.3_AKU4011 | cds-NP_010598.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:90628-91989:- | gene-YDR312W_BG1 | rna-NM_001180620.3_BG1 | cds-NP_010598.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1066835-1068196:+ | gene-YDR312W_Bruggeman | rna-NM_001180620.3_Bruggeman | cds-NP_010598.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1053843-1055204:+ | gene-YDR312W_CAT1 | rna-NM_001180620.3_CAT1 | cds-NP_010598.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1034014-1035375:+ | gene-YDR312W_CBS1585 | rna-NM_001180620.3_CBS1585 | cds-NP_010598.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1052383-1053744:+ | gene-YDR312W_CBS436 | rna-NM_001180620.3_CBS436 | cds-NP_010598.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1030697-1032062:+ | gene-YDR312W_CBS6412 | rna-NM_001180620.3_CBS6412 | cds-NP_010598.3_CBS6412 | 98.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1051934-1053295:+ | gene-YDR312W_CBS6413 | rna-NM_001180620.3_CBS6413 | cds-NP_010598.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1086219-1087580:+ | gene-YDR312W_CENPK1137D | rna-NM_001180620.3_CENPK1137D | cds-NP_010598.3_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:215111-216472:+ | gene-YDR312W_EthanolRed | rna-NM_001180620.3_EthanolRed | cds-NP_010598.3_EthanolRed | 96.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1046326-1047687:+ | gene-YDR312W_FaliES1 | rna-NM_001180620.3_FaliES1 | cds-NP_010598.3_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000386.1:1-187:+ | gene-YDR312W_JAY291 | rna-NM_001180620.3_JAY291 | cds-NP_010598.3_JAY291 | 13.7 | 13.7 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1052346-1053707:+ | gene-YDR312W_MUCL30387 | rna-NM_001180620.3_MUCL30387 | cds-NP_010598.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1039421-1040782:+ | gene-YDR312W_MUCL30388 | rna-NM_001180620.3_MUCL30388 | cds-NP_010598.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1025821-1027182:+ | gene-YDR312W_MUCL39482 | rna-NM_001180620.3_MUCL39482 | cds-NP_010598.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:966965-968326:+ | gene-YDR312W_MUCL42920 | rna-NM_001180620.3_MUCL42920 | cds-NP_010598.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1087504-1088865:+ | gene-YDR312W_NCIM3186 | rna-NM_001180620.3_NCIM3186 | cds-NP_010598.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1039113-1040474:+ | gene-YDR312W_NCYC1407 | rna-NM_001180620.3_NCYC1407 | cds-NP_010598.3_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1050101-1051462:+ | gene-YDR312W_PE2H3 | rna-NM_001180620.3_PE2H3 | cds-NP_010598.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1055686-1057047:+ | gene-YDR312W_PE2H4 | rna-NM_001180620.3_PE2H4 | cds-NP_010598.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1087581-1088942:+ | gene-YDR312W_S288C | rna-NM_001180620.3_S288C | cds-NP_010598.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:64327-65688:+ | gene-YDR312W_SA1 | rna-NM_001180620.3_SA1 | cds-NP_010598.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1050599-1051960:+ | gene-YDR312W_ThermosaccDry | rna-NM_001180620.3_ThermosaccDry | cds-NP_010598.3_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1066518-1067879:+ | gene-YDR312W_VR1 | rna-NM_001180620.3_VR1 | cds-NP_010598.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:94715-96076:+ | gene-YDR312W_ZTW1 | rna-NM_001180620.3_ZTW1 | cds-NP_010598.3_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1046141-1047502:+ | gene-YDR312W_Sparadoxus | rna-NM_001180620.3_Sparadoxus | cds-NP_010598.3_Sparadoxus | 88.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |