Gene name: SSF1
Reference locus (S288C): YHR066W
Gene biotype: protein_coding
Description: Ribosome biogenesis protein SSF1; Constituent of 66S pre-ribosomal particles; required for ribosomal large subunit maturation; functionally redundant with Ssf2p; member of the Brix family; SSF1 has a paralog, SSF2, that arose from the whole genome duplication
Top 10 interactors (score): RPF2 (0.999); DBP3 (0.999); NOP2 (0.999); RRS1 (0.999); DBP10 (0.999); NOP7 (0.999); RRP15 (0.999); NOP12 (0.999); NOC2 (0.999); MAK16 (0.999); HAS1 (0.999); NSA1 (0.999); RRP1 (0.999); DRS1 (0.999); RLP24 (0.999); SPB1 (0.999); PUF6 (0.999); NOP16 (0.999); NOP15 (0.999); RPF1 (0.999)
Homologues (species, bitscore): PPAN-P2RY11 (Homo sapiens, 227.6); Ppan (Mus musculus, 229.6); ppan (Danio rerio, 235.7); ppan (Xenopus tropicalis, 230.7); ppan (Drosophila melanogaster, 196.1); lpd-6 (Caenorhabditis elegans, 163.3); PPAN (Arabidopsis thaliana, 178.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:215613-216974:+ | gene-YHR066W_AKU4011 | rna-NM_001179196.1_AKU4011 | cds-NP_011933.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:136738-138099:+ | gene-YHR066W_BG1 | rna-NM_001179196.1_BG1 | cds-NP_011933.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:223354-224715:+ | gene-YHR066W_Bruggeman | rna-NM_001179196.1_Bruggeman | cds-NP_011933.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:218156-219517:+ | gene-YHR066W_CAT1 | rna-NM_001179196.1_CAT1 | cds-NP_011933.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:214719-216083:+ | gene-YHR066W_CBS1585 | rna-NM_001179196.1_CBS1585 | cds-NP_011933.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:212661-214022:+ | gene-YHR066W_CBS436 | rna-NM_001179196.1_CBS436 | cds-NP_011933.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:214934-216295:+ | gene-YHR066W_CBS6412 | rna-NM_001179196.1_CBS6412 | cds-NP_011933.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:215765-217126:+ | gene-YHR066W_CBS6413 | rna-NM_001179196.1_CBS6413 | cds-NP_011933.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:222499-223860:+ | gene-YHR066W_CENPK1137D | rna-NM_001179196.1_CENPK1137D | cds-NP_011933.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:275453-276641:+ | gene-YHR066W_EthanolRed | rna-NM_001179196.1_EthanolRed | cds-NP_011933.1_EthanolRed | 68.3 | 81.9 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:216076-217437:+ | gene-YHR066W_FaliES1 | rna-NM_001179196.1_FaliES1 | cds-NP_011933.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000280.1:1-1234:- | gene-YHR066W_JAY291 | rna-NM_001179196.1_JAY291 | cds-NP_011933.1_JAY291 | 89.5 | 90.6 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:223092-224453:+ | gene-YHR066W_MUCL30387 | rna-NM_001179196.1_MUCL30387 | cds-NP_011933.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:222987-224348:+ | gene-YHR066W_MUCL30388 | rna-NM_001179196.1_MUCL30388 | cds-NP_011933.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:214988-216349:+ | gene-YHR066W_MUCL39482 | rna-NM_001179196.1_MUCL39482 | cds-NP_011933.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:221867-223228:+ | gene-YHR066W_MUCL42920 | rna-NM_001179196.1_MUCL42920 | cds-NP_011933.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:229217-230578:+ | gene-YHR066W_NCIM3186 | rna-NM_001179196.1_NCIM3186 | cds-NP_011933.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:686629-687990:+ | gene-YHR066W_NCYC1407 | rna-NM_001179196.1_NCYC1407 | cds-NP_011933.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:217190-218551:+ | gene-YHR066W_PE2H3 | rna-NM_001179196.1_PE2H3 | cds-NP_011933.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:224637-225998:+ | gene-YHR066W_PE2H4 | rna-NM_001179196.1_PE2H4 | cds-NP_011933.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:229335-230696:+ | gene-YHR066W_S288C | rna-NM_001179196.1_S288C | cds-NP_011933.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:128725-130086:- | gene-YHR066W_SA1 | rna-NM_001179196.1_SA1 | cds-NP_011933.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:217178-218539:+ | gene-YHR066W_ThermosaccDry | rna-NM_001179196.1_ThermosaccDry | cds-NP_011933.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:224799-226160:+ | gene-YHR066W_VR1 | rna-NM_001179196.1_VR1 | cds-NP_011933.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:208731-210092:+ | gene-YHR066W_ZTW1 | rna-NM_001179196.1_ZTW1 | cds-NP_011933.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:214297-215658:+ | gene-YHR066W_Sparadoxus | rna-NM_001179196.1_Sparadoxus | cds-NP_011933.1_Sparadoxus | 90.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |