Gene name: SSD1
Reference locus (S288C): YDR293C
Gene biotype: protein_coding
Description: Protein SSD1; Translational repressor with a role in polar growth and wall integrity; regulated by Cbk1p phosphorylation to effect bud-specific translational control and localization of specific mRNAs; interacts with TOR pathway components; contains a functional N-terminal nuclear localization sequence and nucleocytoplasmic shuttling appears to be critical to Ssd1p function; Belongs to the RNR ribonuclease family
Top 10 interactors (score): CBK1 (0.992); URH1 (0.964); RRP6 (0.956); XRN1 (0.943); RRP40 (0.94); RRP4 (0.919); CSL4 (0.91); SKI6 (0.845); MTR4 (0.843); RRP46 (0.843); SIT4 (0.84); RRP42 (0.831); SUV3 (0.82); MPT5 (0.8); LSM1 (0.774); SAP190 (0.761); DIS3 (0.745); RNT1 (0.744); ZRG8 (0.743); RRP45 (0.74)
Homologues (species, bitscore): DIS3L2 (Homo sapiens, 238.4); Dis3l2 (Mus musculus, 247.3); LOC566106 (Danio rerio, 223.8); dis3l2 (Xenopus tropicalis, 210.7); Dis3 (Drosophila melanogaster, 172.6); F48E8.6 (Caenorhabditis elegans, 196.8); AT1G77680 (Arabidopsis thaliana, 158.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:997617-1001369:- | gene-YDR293C_AKU4011 | rna-NM_001180601.1_AKU4011 | cds-NP_010579.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:130181-133933:+ | gene-YDR293C_BG1 | rna-NM_001180601.1_BG1 | cds-NP_010579.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1024896-1028648:- | gene-YDR293C_Bruggeman | rna-NM_001180601.1_Bruggeman | cds-NP_010579.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1011907-1015659:- | gene-YDR293C_CAT1 | rna-NM_001180601.1_CAT1 | cds-NP_010579.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:992062-995814:- | gene-YDR293C_CBS1585 | rna-NM_001180601.1_CBS1585 | cds-NP_010579.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1010435-1014187:- | gene-YDR293C_CBS436 | rna-NM_001180601.1_CBS436 | cds-NP_010579.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:988744-992496:- | gene-YDR293C_CBS6412 | rna-NM_001180601.1_CBS6412 | cds-NP_010579.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1009982-1013734:- | gene-YDR293C_CBS6413 | rna-NM_001180601.1_CBS6413 | cds-NP_010579.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1044284-1048036:- | gene-YDR293C_CENPK1137D | rna-NM_001180601.1_CENPK1137D | cds-NP_010579.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:996158-999910:- | gene-YDR293C_EthanolRed | rna-NM_001180601.1_EthanolRed | cds-NP_010579.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1004360-1008112:- | gene-YDR293C_FaliES1 | rna-NM_001180601.1_FaliES1 | cds-NP_010579.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000130.1:22193-25945:- | gene-YDR293C_JAY291 | rna-NM_001180601.1_JAY291 | cds-NP_010579.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1010412-1014164:- | gene-YDR293C_MUCL30387 | rna-NM_001180601.1_MUCL30387 | cds-NP_010579.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:997478-1001230:- | gene-YDR293C_MUCL30388 | rna-NM_001180601.1_MUCL30388 | cds-NP_010579.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:983868-987620:- | gene-YDR293C_MUCL39482 | rna-NM_001180601.1_MUCL39482 | cds-NP_010579.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:923861-927613:- | gene-YDR293C_MUCL42920 | rna-NM_001180601.1_MUCL42920 | cds-NP_010579.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1045563-1049315:- | gene-YDR293C_NCIM3186 | rna-NM_001180601.1_NCIM3186 | cds-NP_010579.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:997161-1000913:- | gene-YDR293C_NCYC1407 | rna-NM_001180601.1_NCYC1407 | cds-NP_010579.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1008165-1011917:- | gene-YDR293C_PE2H3 | rna-NM_001180601.1_PE2H3 | cds-NP_010579.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1013750-1017502:- | gene-YDR293C_PE2H4 | rna-NM_001180601.1_PE2H4 | cds-NP_010579.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1045640-1049392:- | gene-YDR293C_S288C | rna-NM_001180601.1_S288C | cds-NP_010579.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:22372-26124:- | gene-YDR293C_SA1 | rna-NM_001180601.1_SA1 | cds-NP_010579.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1008645-1012397:- | gene-YDR293C_ThermosaccDry | rna-NM_001180601.1_ThermosaccDry | cds-NP_010579.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1024591-1028343:- | gene-YDR293C_VR1 | rna-NM_001180601.1_VR1 | cds-NP_010579.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:52776-56528:- | gene-YDR293C_ZTW1 | rna-NM_001180601.1_ZTW1 | cds-NP_010579.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1004242-1008015:- | gene-YDR293C_Sparadoxus | rna-NM_001180601.1_Sparadoxus | cds-NP_010579.1_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |