Gene name: SSC1
Reference locus (S288C): YJR045C
Gene biotype: protein_coding
Description: Heat shock protein SSC1, mitochondrial; Hsp70 family ATPase; constituent of the import motor component of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); involved in protein translocation and folding; subunit of SceI endonuclease; SSC1 has a paralog, ECM10, that arose from the whole genome duplication
Top 10 interactors (score): TIM17 (0.999); HSP60 (0.999); MDJ1 (0.999); PAM16 (0.999); MGE1 (0.999); PAM18 (0.999); TIM44 (0.999); TIM50 (0.995); TIM23 (0.995); ZIM17 (0.994); PAM17 (0.993); TIM21 (0.989); MDJ2 (0.975); HSP82 (0.974); HSC82 (0.973); HSP10 (0.969); ZUO1 (0.95); TOM40 (0.942); PHB2 (0.938); BRE5 (0.937)
Homologues (species, bitscore): HSPA9 (Homo sapiens, 869.0); Hspa9 (Mus musculus, 864.8); hspa9 (Danio rerio, 874.0); hspa9 (Xenopus tropicalis, 774.6); Hsc70-5 (Drosophila melanogaster, 836.3); hsp-6 (Caenorhabditis elegans, 849.0); MTHSC70-2 (Arabidopsis thaliana, 788.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:491330-493294:- | gene-YJR045C_AKU4011 | rna-NM_001181703.1_AKU4011 | cds-NP_012579.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:119642-121609:+ | gene-YJR045C_BG1 | rna-NM_001181703.1_BG1 | cds-NP_012579.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:505376-507343:- | gene-YJR045C_Bruggeman | rna-NM_001181703.1_Bruggeman | cds-NP_012579.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:509292-511259:- | gene-YJR045C_CAT1 | rna-NM_001181703.1_CAT1 | cds-NP_012579.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:502907-504874:- | gene-YJR045C_CBS1585 | rna-NM_001181703.1_CBS1585 | cds-NP_012579.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:521853-523823:- | gene-YJR045C_CBS436 | rna-NM_001181703.1_CBS436 | cds-NP_012579.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:491115-493079:- | gene-YJR045C_CBS6412 | rna-NM_001181703.1_CBS6412 | cds-NP_012579.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:493360-495324:- | gene-YJR045C_CBS6413 | rna-NM_001181703.1_CBS6413 | cds-NP_012579.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:501994-503961:- | gene-YJR045C_CENPK1137D | rna-NM_001181703.1_CENPK1137D | cds-NP_012579.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:496246-498210:- | gene-YJR045C_EthanolRed | rna-NM_001181703.1_EthanolRed | cds-NP_012579.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:507463-509427:- | gene-YJR045C_FaliES1 | rna-NM_001181703.1_FaliES1 | cds-NP_012579.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000250.1:22324-24291:- | gene-YJR045C_JAY291 | rna-NM_001181703.1_JAY291 | cds-NP_012579.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:505666-507633:- | gene-YJR045C_MUCL30387 | rna-NM_001181703.1_MUCL30387 | cds-NP_012579.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:502219-504186:- | gene-YJR045C_MUCL30388 | rna-NM_001181703.1_MUCL30388 | cds-NP_012579.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:496367-498334:- | gene-YJR045C_MUCL39482 | rna-NM_001181703.1_MUCL39482 | cds-NP_012579.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:501626-503593:- | gene-YJR045C_MUCL42920 | rna-NM_001181703.1_MUCL42920 | cds-NP_012579.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:519617-521581:- | gene-YJR045C_NCIM3186 | rna-NM_001181703.1_NCIM3186 | cds-NP_012579.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:494212-496176:- | gene-YJR045C_NCYC1407 | rna-NM_001181703.1_NCYC1407 | cds-NP_012579.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:512562-514529:- | gene-YJR045C_PE2H3 | rna-NM_001181703.1_PE2H3 | cds-NP_012579.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:506258-508225:- | gene-YJR045C_PE2H4 | rna-NM_001181703.1_PE2H4 | cds-NP_012579.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:519638-521602:- | gene-YJR045C_S288C | rna-NM_001181703.1_S288C | cds-NP_012579.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:304479-306455:- | gene-YJR045C_SA1 | rna-NM_001181703.1_SA1 | cds-NP_012579.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:501151-503115:- | gene-YJR045C_ThermosaccDry | rna-NM_001181703.1_ThermosaccDry | cds-NP_012579.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:503641-505608:- | gene-YJR045C_VR1 | rna-NM_001181703.1_VR1 | cds-NP_012579.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:481037-483004:- | gene-YJR045C_ZTW1 | rna-NM_001181703.1_ZTW1 | cds-NP_012579.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:507266-509221:- | gene-YJR045C_Sparadoxus | rna-NM_001181703.1_Sparadoxus | cds-NP_012579.1_Sparadoxus | 92.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |