Gene name: SSB2
Reference locus (S288C): YNL209W
Gene biotype: protein_coding
Description: Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; functions with J-protein partner Zuo1p; may be involved in the folding of newly-synthesized polypeptide chains; member of the HSP70 family; SSB2 has a paralog, SSB1, that arose from the whole genome duplication; Belongs to the heat shock protein 70 family. Ssb-type Hsp70 subfamily
Top 10 interactors (score): RPS2 (0.992); RPS3 (0.991); RPL5 (0.987); ZUO1 (0.985); YEF3 (0.984); RPP0 (0.979); RPL4B (0.975); EFT1 (0.974); SSB1 (0.971); ASC1 (0.967); RPL3 (0.958); RPL26A (0.951); EFT2 (0.945); EFB1 (0.944); RPS4A (0.943); RPS1A (0.942); RPL1A (0.941); RPS31 (0.941); RPS0A (0.94); RPL17A (0.938)
Homologues (species, bitscore): HSPA8 (Homo sapiens, 736.5); Hspa8 (Mus musculus, 736.5); hspa1b (Danio rerio, 737.3); hspa8 (Xenopus tropicalis, 740.7); Hsc70-4 (Drosophila melanogaster, 727.6); hsp-1 (Caenorhabditis elegans, 728.4); Hsp70b (Arabidopsis thaliana, 723.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:149784-151625:+ | gene-YNL209W_BG1 | rna-NM_001183047.1_BG1 | cds-NP_014190.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:255883-257723:+ | gene-YNL209W_Bruggeman | rna-NM_001183047.1_Bruggeman | cds-NP_014190.1_Bruggeman | 75.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:298143-299965:+ | gene-YNL209W_CAT1 | rna-NM_001183047.1_CAT1 | cds-NP_014190.1_CAT1 | 70.5 | 88.5 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:246234-248324:+ | gene-YNL209W_CBS1585 | rna-NM_001183047.1_CBS1585 | cds-NP_014190.1_CBS1585 | 87.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:315196-316585:+ | gene-YNL209W_CBS436 | rna-NM_001183047.1_CBS436 | cds-NP_014190.1_CBS436 | 64.5 | 71.6 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:242271-243736:+ | gene-YNL209W_CBS6412 | rna-NM_001183047.1_CBS6412 | cds-NP_014190.1_CBS6412 | 60.9 | 79.5 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:242917-244757:+ | gene-YNL209W_CBS6413 | rna-NM_001183047.1_CBS6413 | cds-NP_014190.1_CBS6413 | 88.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:245860-247748:+ | gene-YNL209W_CENPK1137D | rna-NM_001183047.1_CENPK1137D | cds-NP_014190.1_CENPK1137D | 97.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | MBWB01000048.1:1-1643:+ | gene-YNL209W_EthanolRed | rna-NM_001183047.1_EthanolRed | cds-NP_014190.1_EthanolRed | 88.4 | 89.1 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:44378-46274:+ | gene-YNL209W_FaliES1 | rna-NM_001183047.1_FaliES1 | cds-NP_014190.1_FaliES1 | 88.8 | 96.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000143.1:1-778:- | gene-YNL209W_JAY291 | rna-NM_001183047.1_JAY291 | cds-NP_014190.1_JAY291 | 42.1 | 42.2 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:251419-253509:+ | gene-YNL209W_MUCL30387 | rna-NM_001183047.1_MUCL30387 | cds-NP_014190.1_MUCL30387 | 87.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:286339-287852:+ | gene-YNL209W_MUCL30388 | rna-NM_001183047.1_MUCL30388 | cds-NP_014190.1_MUCL30388 | 70.2 | 80.4 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:243723-245563:+ | gene-YNL209W_MUCL39482 | rna-NM_001183047.1_MUCL39482 | cds-NP_014190.1_MUCL39482 | 83.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:245981-247925:+ | gene-YNL209W_MUCL42920 | rna-NM_001183047.1_MUCL42920 | cds-NP_014190.1_MUCL42920 | 94.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:252028-253869:+ | gene-YNL209W_NCIM3186 | rna-NM_001183047.1_NCIM3186 | cds-NP_014190.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:242721-244562:+ | gene-YNL209W_PE2H3 | rna-NM_001183047.1_PE2H3 | cds-NP_014190.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:242109-243950:+ | gene-YNL209W_PE2H4 | rna-NM_001183047.1_PE2H4 | cds-NP_014190.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:252059-253900:+ | gene-YNL209W_S288C | rna-NM_001183047.1_S288C | cds-NP_014190.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:159701-160482:- | gene-YNL209W_SA1 | rna-NM_001183047.1_SA1 | cds-NP_014190.1_SA1 | 42.4 | 42.4 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:239345-241172:+ | gene-YNL209W_ThermosaccDry | rna-NM_001183047.1_ThermosaccDry | cds-NP_014190.1_ThermosaccDry | 91.1 | 96.9 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:44386-46204:+ | gene-YNL209W_VR1 | rna-NM_001183047.1_VR1 | cds-NP_014190.1_VR1 | 92.9 | 97.3 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:149404-151245:+ | gene-YNL209W_ZTW1 | rna-NM_001183047.1_ZTW1 | cds-NP_014190.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:249875-251716:+ | gene-YNL209W_Sparadoxus | rna-NM_001183047.1_Sparadoxus | cds-NP_014190.1_Sparadoxus | 96.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |