Gene name: SSB1
Reference locus (S288C): YDL229W
Gene biotype: protein_coding
Description: Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; functions with J-protein partner Zuo1p; may be involved in folding of newly-made polypeptide chains; member of the HSP70 family; interacts with phosphatase subunit Reg1p; SSB1 has a paralog, SSB2, that arose from the whole genome duplication; Belongs to the heat shock protein 70 family. Ssb-type Hsp70 subfamily
Top 10 interactors (score): SSB2 (0.971); EFB1 (0.969); ZUO1 (0.963); RPS2 (0.929); EFT1 (0.893); SSE1 (0.878); YDJ1 (0.876); HSP82 (0.869); RPL4B (0.859); RPL35B (0.855); HSC82 (0.849); RPL4A (0.836); ASC1 (0.835); HSP104 (0.835); MDJ1 (0.824); RPL5 (0.819); EFT2 (0.815); SUP35 (0.808); RPL3 (0.802); RPS20 (0.799)
Homologues (species, bitscore): HSPA8 (Homo sapiens, 733.4); Hspa8 (Mus musculus, 734.2); hspa8b (Danio rerio, 734.6); hspa8 (Xenopus tropicalis, 738.4); Hsc70-4 (Drosophila melanogaster, 724.5); hsp-1 (Caenorhabditis elegans, 725.7); Hsp70b (Arabidopsis thaliana, 722.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:27167-29506:+ | gene-YDL229W_AKU4011 | rna-NM_001180289.1_AKU4011 | cds-NP_010052.1_AKU4011 | 78.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000077.1:37593-39434:- | gene-YDL229W_BG1 | rna-NM_001180289.1_BG1 | cds-NP_010052.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:42887-45081:+ | gene-YDL229W_Bruggeman | rna-NM_001180289.1_Bruggeman | cds-NP_010052.1_Bruggeman | 83.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:263037-264878:+ | gene-YDL229W_CAT1 | rna-NM_001180289.1_CAT1 | cds-NP_010052.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:26542-28382:+ | gene-YDL229W_CBS1585 | rna-NM_001180289.1_CBS1585 | cds-NP_010052.1_CBS1585 | 81.2 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:241314-243155:+ | gene-YDL229W_CBS436 | rna-NM_001180289.1_CBS436 | cds-NP_010052.1_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000037.1:1-760:+ | gene-YDL229W_CBS6412 | rna-NM_001180289.1_CBS6412 | cds-NP_010052.1_CBS6412 | 41.2 | 41.2 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:43927-46017:+ | gene-YDL229W_CBS6413 | rna-NM_001180289.1_CBS6413 | cds-NP_010052.1_CBS6413 | 87.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:43032-44573:+ | gene-YDL229W_CENPK1137D | rna-NM_001180289.1_CENPK1137D | cds-NP_010052.1_CENPK1137D | 53.3 | 83.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000213.1:1-604:+ | gene-YDL229W_JAY291 | rna-NM_001180289.1_JAY291 | cds-NP_010052.1_JAY291 | 32.7 | 32.7 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:42183-44023:+ | gene-YDL229W_MUCL30387 | rna-NM_001180289.1_MUCL30387 | cds-NP_010052.1_MUCL30387 | 79.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:250000-251841:+ | gene-YDL229W_MUCL30388 | rna-NM_001180289.1_MUCL30388 | cds-NP_010052.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:27136-29226:+ | gene-YDL229W_MUCL39482 | rna-NM_001180289.1_MUCL39482 | cds-NP_010052.1_MUCL39482 | 87.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:43325-45165:+ | gene-YDL229W_MUCL42920 | rna-NM_001180289.1_MUCL42920 | cds-NP_010052.1_MUCL42920 | 78.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:43988-45829:+ | gene-YDL229W_NCIM3186 | rna-NM_001180289.1_NCIM3186 | cds-NP_010052.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:27092-29182:+ | gene-YDL229W_NCYC1407 | rna-NM_001180289.1_NCYC1407 | cds-NP_010052.1_NCYC1407 | 87.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:34376-36217:+ | gene-YDL229W_PE2H3 | rna-NM_001180289.1_PE2H3 | cds-NP_010052.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:34386-36227:+ | gene-YDL229W_PE2H4 | rna-NM_001180289.1_PE2H4 | cds-NP_010052.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:44065-45906:+ | gene-YDL229W_S288C | rna-NM_001180289.1_S288C | cds-NP_010052.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000094.1:1-410:+ | gene-YDL229W_SA1 | rna-NM_001180289.1_SA1 | cds-NP_010052.1_SA1 | 22.2 | 22.2 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:43248-45089:+ | gene-YDL229W_ZTW1 | rna-NM_001180289.1_ZTW1 | cds-NP_010052.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:46543-48384:+ | gene-YDL229W_Sparadoxus | rna-NM_001180289.1_Sparadoxus | cds-NP_010052.1_Sparadoxus | 97.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |