Gene name: SRY1
Reference locus (S288C): YKL218C
Gene biotype: protein_coding
Description: Threo-3-hydroxy-L-aspartate ammonia-lyase SRY1; 3-hydroxyaspartate dehydratase; deaminates L-threo-3-hydroxyaspartate to form oxaloacetate and ammonia; required in the presence of hydroxyaspartate; highly similar to mouse serine racemase (Srr) but has no serine racemase activity
Top 10 interactors (score): COS9 (0.892); PRE5 (0.889); TRP3 (0.837); YKL223W (0.78); YHL041W (0.773); YHL048C-A (0.773); YHL046W-A (0.773); YPL257W (0.748); YKL225W (0.747); PAU16 (0.747); ARL3 (0.745); YHL045W (0.745); PAU13 (0.712); MGA1 (0.712); YHL042W (0.698); YKL222C (0.697); UBR2 (0.696); YHL049C (0.691); YHL050C (0.67); YHL044W (0.67)
Homologues (species, bitscore): SRR (Homo sapiens, 244.6); Srr (Mus musculus, 236.1); si:ch73-263o4.4 (Danio rerio, 122.1); srr (Xenopus tropicalis, 233.0); CG8129 (Drosophila melanogaster, 189.9); Y51H7C.9 (Caenorhabditis elegans, 184.1); SR (Arabidopsis thaliana, 254.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:3203-4183:- | gene-YKL218C_AKU4011 | rna-NM_001179783.1_AKU4011 | cds-NP_012704.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000195.1:1135-2115:+ | gene-YKL218C_BG1 | rna-NM_001179783.1_BG1 | cds-NP_012704.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:21126-22106:- | gene-YKL218C_Bruggeman | rna-NM_001179783.1_Bruggeman | cds-NP_012704.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:16019-16999:- | gene-YKL218C_CAT1 | rna-NM_001179783.1_CAT1 | cds-NP_012704.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:15228-16208:- | gene-YKL218C_CBS1585 | rna-NM_001179783.1_CBS1585 | cds-NP_012704.1_CBS1585 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:14921-15901:- | gene-YKL218C_CBS436 | rna-NM_001179783.1_CBS436 | cds-NP_012704.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:1353-2333:- | gene-YKL218C_CBS6412 | rna-NM_001179783.1_CBS6412 | cds-NP_012704.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:15908-16888:- | gene-YKL218C_CBS6413 | rna-NM_001179783.1_CBS6413 | cds-NP_012704.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:17201-18181:- | gene-YKL218C_CENPK1137D | rna-NM_001179783.1_CENPK1137D | cds-NP_012704.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:15547-16527:- | gene-YKL218C_EthanolRed | rna-NM_001179783.1_EthanolRed | cds-NP_012704.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:15189-16169:- | gene-YKL218C_FaliES1 | rna-NM_001179783.1_FaliES1 | cds-NP_012704.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000006.2:14861-15841:- | gene-YKL218C_JAY291 | rna-NM_001179783.1_JAY291 | cds-NP_012704.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:21123-22103:- | gene-YKL218C_MUCL30387 | rna-NM_001179783.1_MUCL30387 | cds-NP_012704.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:16769-17749:- | gene-YKL218C_MUCL30388 | rna-NM_001179783.1_MUCL30388 | cds-NP_012704.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:15272-16252:- | gene-YKL218C_MUCL39482 | rna-NM_001179783.1_MUCL39482 | cds-NP_012704.1_MUCL39482 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:19022-20002:- | gene-YKL218C_MUCL42920 | rna-NM_001179783.1_MUCL42920 | cds-NP_012704.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:17348-18328:- | gene-YKL218C_NCIM3186 | rna-NM_001179783.1_NCIM3186 | cds-NP_012704.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:15306-16286:- | gene-YKL218C_NCYC1407 | rna-NM_001179783.1_NCYC1407 | cds-NP_012704.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:23479-24459:- | gene-YKL218C_PE2H3 | rna-NM_001179783.1_PE2H3 | cds-NP_012704.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:19682-20662:- | gene-YKL218C_PE2H4 | rna-NM_001179783.1_PE2H4 | cds-NP_012704.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:17359-18339:- | gene-YKL218C_S288C | rna-NM_001179783.1_S288C | cds-NP_012704.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000167.1:491-1471:- | gene-YKL218C_SA1 | rna-NM_001179783.1_SA1 | cds-NP_012704.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:15926-16906:- | gene-YKL218C_ThermosaccDry | rna-NM_001179783.1_ThermosaccDry | cds-NP_012704.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:15106-16086:- | gene-YKL218C_VR1 | rna-NM_001179783.1_VR1 | cds-NP_012704.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:14892-15872:- | gene-YKL218C_ZTW1 | rna-NM_001179783.1_ZTW1 | cds-NP_012704.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:23457-24437:- | gene-YKL218C_Sparadoxus | rna-NM_001179783.1_Sparadoxus | cds-NP_012704.1_Sparadoxus | 88.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |