Gene name: SRT1
Reference locus (S288C): YMR101C
Gene biotype: protein_coding
Description: Forms the dehydrodolichyl diphosphate syntase (DDS) complex with NUS1; involved in synthesis of long-chain dolichols (19-22 isoprene units; as opposed to Rer2p which synthesizes shorter-chain dolichols); localizes to lipid bodies; transcription is induced during stationary phase; Belongs to the UPP synthase family
Top 10 interactors (score): NUS1 (0.996); ERG20 (0.993); RAM2 (0.962); RER2 (0.952); RAM1 (0.951); BTS1 (0.951); DPM1 (0.938); COQ1 (0.93); ERG9 (0.915); DFG10 (0.911); YMR103C (0.695); YBR013C (0.695); YBR116C (0.69); SEC59 (0.677); RMA1 (0.647); CAX4 (0.636); MVD1 (0.594); YIR016W (0.591); IDI1 (0.589); OPI10 (0.573)
Homologues (species, bitscore): DHDDS (Homo sapiens, 151.4); Dhdds (Mus musculus, 154.5); dhdds (Danio rerio, 153.3); dhdds (Xenopus tropicalis, 163.3); CG10778 (Drosophila melanogaster, 139.0); T01G1.4 (Caenorhabditis elegans, 162.2); cPT9 (Arabidopsis thaliana, 149.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:506388-507419:- | gene-YMR101C_AKU4011 | rna-NM_001182601.1_AKU4011 | cds-NP_013819.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:35596-36627:+ | gene-YMR101C_BG1 | rna-NM_001182601.1_BG1 | cds-NP_013819.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:448815-449846:- | gene-YMR101C_Bruggeman | rna-NM_001182601.1_Bruggeman | cds-NP_013819.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:449137-450168:- | gene-YMR101C_CAT1 | rna-NM_001182601.1_CAT1 | cds-NP_013819.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:439335-440366:- | gene-YMR101C_CBS1585 | rna-NM_001182601.1_CBS1585 | cds-NP_013819.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:444650-445681:- | gene-YMR101C_CBS436 | rna-NM_001182601.1_CBS436 | cds-NP_013819.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:552429-553460:- | gene-YMR101C_CBS6412 | rna-NM_001182601.1_CBS6412 | cds-NP_013819.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:438592-439623:- | gene-YMR101C_CBS6413 | rna-NM_001182601.1_CBS6413 | cds-NP_013819.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:462553-463584:- | gene-YMR101C_CENPK1137D | rna-NM_001182601.1_CENPK1137D | cds-NP_013819.1_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:439227-440258:- | gene-YMR101C_EthanolRed | rna-NM_001182601.1_EthanolRed | cds-NP_013819.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:442392-443423:- | gene-YMR101C_FaliES1 | rna-NM_001182601.1_FaliES1 | cds-NP_013819.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000349.1:5198-6229:- | gene-YMR101C_JAY291 | rna-NM_001182601.1_JAY291 | cds-NP_013819.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:445738-446769:- | gene-YMR101C_MUCL30387 | rna-NM_001182601.1_MUCL30387 | cds-NP_013819.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:449734-450765:- | gene-YMR101C_MUCL30388 | rna-NM_001182601.1_MUCL30388 | cds-NP_013819.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:439641-440672:- | gene-YMR101C_MUCL39482 | rna-NM_001182601.1_MUCL39482 | cds-NP_013819.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:446304-447335:- | gene-YMR101C_MUCL42920 | rna-NM_001182601.1_MUCL42920 | cds-NP_013819.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:468399-469430:- | gene-YMR101C_NCIM3186 | rna-NM_001182601.1_NCIM3186 | cds-NP_013819.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:439536-440567:- | gene-YMR101C_NCYC1407 | rna-NM_001182601.1_NCYC1407 | cds-NP_013819.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:445248-446279:- | gene-YMR101C_PE2H3 | rna-NM_001182601.1_PE2H3 | cds-NP_013819.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:451343-452374:- | gene-YMR101C_PE2H4 | rna-NM_001182601.1_PE2H4 | cds-NP_013819.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:468445-469476:- | gene-YMR101C_S288C | rna-NM_001182601.1_S288C | cds-NP_013819.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:80690-81721:+ | gene-YMR101C_SA1 | rna-NM_001182601.1_SA1 | cds-NP_013819.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:440195-441226:- | gene-YMR101C_ThermosaccDry | rna-NM_001182601.1_ThermosaccDry | cds-NP_013819.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:451834-452865:- | gene-YMR101C_VR1 | rna-NM_001182601.1_VR1 | cds-NP_013819.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:416464-417496:- | gene-YMR101C_ZTW1 | rna-NM_001182601.1_ZTW1 | cds-NP_013819.1_ZTW1 | 99.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:452724-453758:- | gene-YMR101C_Sparadoxus | rna-NM_001182601.1_Sparadoxus | cds-NP_013819.1_Sparadoxus | 88.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |