Gene name: SRP72
Reference locus (S288C): YPL210C
Gene biotype: protein_coding
Description: Signal recognition particle subunit srp72; Core component of the signal recognition particle (SRP); the SRP is a ribonucleoprotein (RNP) complex that functions in targeting nascent secretory proteins to the endoplasmic reticulum (ER) membrane
Top 10 interactors (score): SRP68 (0.999); SEC65 (0.999); SRP14 (0.999); SRP54 (0.999); SRP21 (0.998); SRP101 (0.984); SRP102 (0.971); MRPL17 (0.82); LHP1 (0.812); SEC63 (0.78); SEC21 (0.678); NTG1 (0.655); RPL17A (0.652); MNP1 (0.647); RPL5 (0.641); RPL39 (0.64); RPL3 (0.64); RPL30 (0.637); RPL28 (0.637); MRPS9 (0.609)
Homologues (species, bitscore): SRP72 (Homo sapiens, 78.6); Srp72 (Mus musculus, 72.4); srp72 (Danio rerio, 68.6); srp72 (Xenopus tropicalis, 72.0); Srp72 (Drosophila melanogaster, 76.3); srpa-72 (Caenorhabditis elegans, 74.3); AT1G67680 (Arabidopsis thaliana, 84.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:132162-134084:- | gene-YPL210C_AKU4011 | rna-NM_001184024.1_AKU4011 | cds-NP_015114.2_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:337932-339854:- | gene-YPL210C_BG1 | rna-NM_001184024.1_BG1 | cds-NP_015114.2_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:157626-159548:- | gene-YPL210C_Bruggeman | rna-NM_001184024.1_Bruggeman | cds-NP_015114.2_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:154234-156156:- | gene-YPL210C_CAT1 | rna-NM_001184024.1_CAT1 | cds-NP_015114.2_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:136347-138269:- | gene-YPL210C_CBS1585 | rna-NM_001184024.1_CBS1585 | cds-NP_015114.2_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:150770-152692:- | gene-YPL210C_CBS436 | rna-NM_001184024.1_CBS436 | cds-NP_015114.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:141151-143073:- | gene-YPL210C_CBS6412 | rna-NM_001184024.1_CBS6412 | cds-NP_015114.2_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:132525-134447:- | gene-YPL210C_CBS6413 | rna-NM_001184024.1_CBS6413 | cds-NP_015114.2_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:154227-156149:- | gene-YPL210C_CENPK1137D | rna-NM_001184024.1_CENPK1137D | cds-NP_015114.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:131278-133200:- | gene-YPL210C_EthanolRed | rna-NM_001184024.1_EthanolRed | cds-NP_015114.2_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:138484-140406:- | gene-YPL210C_FaliES1 | rna-NM_001184024.1_FaliES1 | cds-NP_015114.2_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000069.1:17918-19840:+ | gene-YPL210C_JAY291 | rna-NM_001184024.1_JAY291 | cds-NP_015114.2_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:149335-151257:- | gene-YPL210C_MUCL30387 | rna-NM_001184024.1_MUCL30387 | cds-NP_015114.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:147526-149448:- | gene-YPL210C_MUCL30388 | rna-NM_001184024.1_MUCL30388 | cds-NP_015114.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:129477-131399:- | gene-YPL210C_MUCL39482 | rna-NM_001184024.1_MUCL39482 | cds-NP_015114.2_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:148360-150282:- | gene-YPL210C_MUCL42920 | rna-NM_001184024.1_MUCL42920 | cds-NP_015114.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:154273-156195:- | gene-YPL210C_NCIM3186 | rna-NM_001184024.1_NCIM3186 | cds-NP_015114.2_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:135926-137848:- | gene-YPL210C_NCYC1407 | rna-NM_001184024.1_NCYC1407 | cds-NP_015114.2_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:143634-145556:- | gene-YPL210C_PE2H3 | rna-NM_001184024.1_PE2H3 | cds-NP_015114.2_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:143277-145199:- | gene-YPL210C_PE2H4 | rna-NM_001184024.1_PE2H4 | cds-NP_015114.2_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:154290-156212:- | gene-YPL210C_S288C | rna-NM_001184024.1_S288C | cds-NP_015114.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000095.1:17970-19892:+ | gene-YPL210C_SA1 | rna-NM_001184024.1_SA1 | cds-NP_015114.2_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:138265-140187:- | gene-YPL210C_ThermosaccDry | rna-NM_001184024.1_ThermosaccDry | cds-NP_015114.2_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:152313-154235:- | gene-YPL210C_VR1 | rna-NM_001184024.1_VR1 | cds-NP_015114.2_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:137785-139707:- | gene-YPL210C_ZTW1 | rna-NM_001184024.1_ZTW1 | cds-NP_015114.2_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:139342-141267:- | gene-YPL210C_Sparadoxus | rna-NM_001184024.1_Sparadoxus | cds-NP_015114.2_Sparadoxus | 88.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |