Gene name: SRP54
Reference locus (S288C): YPR088C
Gene biotype: protein_coding
Description: Signal recognition particle (SRP) subunit (homolog of mammalian SRP54); contains the signal sequence-binding activity of SRP, interacts with the SRP RNA, and mediates binding of SRP to signal receptor; contains GTPase domain
Top 10 interactors (score): SRP14 (0.999); SRP72 (0.999); SEC65 (0.999); SRP68 (0.999); SRP21 (0.997); RPL25 (0.995); SRP101 (0.987); SRP102 (0.985); SEC61 (0.962); SEC62 (0.936); RPL5 (0.925); GET3 (0.914); SEC63 (0.909); RPL28 (0.897); RPL3 (0.892); RPL39 (0.891); MRPL8 (0.887); RPL35A (0.886); RPL35B (0.882); NTG1 (0.882)
Homologues (species, bitscore): SRP54 (Homo sapiens, 467.2); Srp54a (Mus musculus, 469.2); srp54 (Danio rerio, 457.2); SRP54 (Xenopus tropicalis, 344.0); Srp54k (Drosophila melanogaster, 444.9); F21D5.7 (Caenorhabditis elegans, 443.0); AT1G48900 (Arabidopsis thaliana, 424.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:683084-684709:- | gene-YPR088C_AKU4011 | rna-NM_001184185.1_AKU4011 | cds-NP_015413.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:212969-214594:+ | gene-YPR088C_BG1 | rna-NM_001184185.1_BG1 | cds-NP_015413.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:760762-762387:- | gene-YPR088C_Bruggeman | rna-NM_001184185.1_Bruggeman | cds-NP_015413.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:805063-806688:- | gene-YPR088C_CAT1 | rna-NM_001184185.1_CAT1 | cds-NP_015413.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:687010-688635:- | gene-YPR088C_CBS1585 | rna-NM_001184185.1_CBS1585 | cds-NP_015413.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:701638-703263:- | gene-YPR088C_CBS436 | rna-NM_001184185.1_CBS436 | cds-NP_015413.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:690146-691771:- | gene-YPR088C_CBS6412 | rna-NM_001184185.1_CBS6412 | cds-NP_015413.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:683967-685592:- | gene-YPR088C_CBS6413 | rna-NM_001184185.1_CBS6413 | cds-NP_015413.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:711381-713006:- | gene-YPR088C_CENPK1137D | rna-NM_001184185.1_CENPK1137D | cds-NP_015413.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1010081-1011706:- | gene-YPR088C_EthanolRed | rna-NM_001184185.1_EthanolRed | cds-NP_015413.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:688914-690539:- | gene-YPR088C_FaliES1 | rna-NM_001184185.1_FaliES1 | cds-NP_015413.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000094.1:10807-12432:- | gene-YPR088C_JAY291 | rna-NM_001184185.1_JAY291 | cds-NP_015413.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:702021-703646:- | gene-YPR088C_MUCL30387 | rna-NM_001184185.1_MUCL30387 | cds-NP_015413.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:700710-702335:- | gene-YPR088C_MUCL30388 | rna-NM_001184185.1_MUCL30388 | cds-NP_015413.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:680016-681641:- | gene-YPR088C_MUCL39482 | rna-NM_001184185.1_MUCL39482 | cds-NP_015413.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:742862-744487:- | gene-YPR088C_MUCL42920 | rna-NM_001184185.1_MUCL42920 | cds-NP_015413.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:711386-713011:- | gene-YPR088C_NCIM3186 | rna-NM_001184185.1_NCIM3186 | cds-NP_015413.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:688443-690068:- | gene-YPR088C_NCYC1407 | rna-NM_001184185.1_NCYC1407 | cds-NP_015413.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:694843-696468:- | gene-YPR088C_PE2H3 | rna-NM_001184185.1_PE2H3 | cds-NP_015413.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:694491-696116:- | gene-YPR088C_PE2H4 | rna-NM_001184185.1_PE2H4 | cds-NP_015413.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:711403-713028:- | gene-YPR088C_S288C | rna-NM_001184185.1_S288C | cds-NP_015413.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:9520-11145:- | gene-YPR088C_SA1 | rna-NM_001184185.1_SA1 | cds-NP_015413.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:688689-690314:- | gene-YPR088C_ThermosaccDry | rna-NM_001184185.1_ThermosaccDry | cds-NP_015413.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:705332-706957:- | gene-YPR088C_VR1 | rna-NM_001184185.1_VR1 | cds-NP_015413.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:687908-689533:- | gene-YPR088C_ZTW1 | rna-NM_001184185.1_ZTW1 | cds-NP_015413.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:688647-690275:- | gene-YPR088C_Sparadoxus | rna-NM_001184185.1_Sparadoxus | cds-NP_015413.1_Sparadoxus | 93.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |