Gene name: SRP40
Reference locus (S288C): YKR092C
Gene biotype: protein_coding
Description: Suppressor protein SRP40; Nucleolar serine-rich protein; role in preribosome assembly or transport; may function as a chaperone of small nucleolar ribonucleoprotein particles (snoRNPs); immunologically and structurally to rat Nopp140
Top 10 interactors (score): NOP1 (0.999); NOP58 (0.999); NOP56 (0.999); CBF5 (0.996); RPA135 (0.986); HAS1 (0.986); UTP5 (0.985); NOG1 (0.984); ERB1 (0.984); RPA190 (0.984); NHP2 (0.976); DRS1 (0.975); NOC2 (0.974); NUG1 (0.974); RRB1 (0.972); RRS1 (0.972); UTP22 (0.971); NOP53 (0.97); BRX1 (0.969); RPA49 (0.968)
Homologues (species, bitscore): NOLC1 (Homo sapiens, 97.8); Nolc1 (Mus musculus, 110.5); nolc1 (Danio rerio, 109.0); nolc1 (Xenopus tropicalis, 94.0); dao-5 (Caenorhabditis elegans, 91.3); AT5G57120 (Arabidopsis thaliana, 58.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:598695-599831:- | gene-YKR092C_AKU4011 | rna-NM_001179882.3_AKU4011 | cds-NP_013018.3_AKU4011 | 90.0 | 91.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:44325-45530:+ | gene-YKR092C_BG1 | rna-NM_001179882.3_BG1 | cds-NP_013018.3_BG1 | 97.1 | 98.2 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:621273-622433:- | gene-YKR092C_Bruggeman | rna-NM_001179882.3_Bruggeman | cds-NP_013018.3_Bruggeman | 92.6 | 94.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:617187-618398:- | gene-YKR092C_CAT1 | rna-NM_001179882.3_CAT1 | cds-NP_013018.3_CAT1 | 97.9 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:611183-612319:- | gene-YKR092C_CBS1585 | rna-NM_001179882.3_CBS1585 | cds-NP_013018.3_CBS1585 | 90.1 | 91.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:609568-610728:- | gene-YKR092C_CBS436 | rna-NM_001179882.3_CBS436 | cds-NP_013018.3_CBS436 | 92.6 | 94.3 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:594471-595607:- | gene-YKR092C_CBS6412 | rna-NM_001179882.3_CBS6412 | cds-NP_013018.3_CBS6412 | 90.0 | 91.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:611001-612137:- | gene-YKR092C_CBS6413 | rna-NM_001179882.3_CBS6413 | cds-NP_013018.3_CBS6413 | 90.1 | 91.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:612319-613548:- | gene-YKR092C_CENPK1137D | rna-NM_001179882.3_CENPK1137D | cds-NP_013018.3_CENPK1137D | 98.0 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:608506-609720:- | gene-YKR092C_EthanolRed | rna-NM_001179882.3_EthanolRed | cds-NP_013018.3_EthanolRed | 96.7 | 98.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:612401-613615:- | gene-YKR092C_FaliES1 | rna-NM_001179882.3_FaliES1 | cds-NP_013018.3_FaliES1 | 96.7 | 98.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000426.1:31370-32530:+ | gene-YKR092C_JAY291 | rna-NM_001179882.3_JAY291 | cds-NP_013018.3_JAY291 | 92.6 | 94.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:620768-621949:- | gene-YKR092C_MUCL30387 | rna-NM_001179882.3_MUCL30387 | cds-NP_013018.3_MUCL30387 | 94.5 | 96.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:615112-616272:- | gene-YKR092C_MUCL30388 | rna-NM_001179882.3_MUCL30388 | cds-NP_013018.3_MUCL30388 | 92.6 | 94.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:610022-611158:- | gene-YKR092C_MUCL39482 | rna-NM_001179882.3_MUCL39482 | cds-NP_013018.3_MUCL39482 | 89.9 | 91.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:616046-617206:- | gene-YKR092C_MUCL42920 | rna-NM_001179882.3_MUCL42920 | cds-NP_013018.3_MUCL42920 | 92.6 | 94.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:612654-613874:- | gene-YKR092C_NCIM3186 | rna-NM_001179882.3_NCIM3186 | cds-NP_013018.3_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:610436-611572:- | gene-YKR092C_NCYC1407 | rna-NM_001179882.3_NCYC1407 | cds-NP_013018.3_NCYC1407 | 90.1 | 91.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:635643-636803:- | gene-YKR092C_PE2H3 | rna-NM_001179882.3_PE2H3 | cds-NP_013018.3_PE2H3 | 92.6 | 94.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:620044-621249:- | gene-YKR092C_PE2H4 | rna-NM_001179882.3_PE2H4 | cds-NP_013018.3_PE2H4 | 97.0 | 98.2 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:612665-613885:- | gene-YKR092C_S288C | rna-NM_001179882.3_S288C | cds-NP_013018.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:67975-69186:+ | gene-YKR092C_SA1 | rna-NM_001179882.3_SA1 | cds-NP_013018.3_SA1 | 97.9 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:611648-612862:- | gene-YKR092C_ThermosaccDry | rna-NM_001179882.3_ThermosaccDry | cds-NP_013018.3_ThermosaccDry | 96.7 | 98.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:610911-612116:- | gene-YKR092C_VR1 | rna-NM_001179882.3_VR1 | cds-NP_013018.3_VR1 | 97.0 | 98.2 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:608629-609834:- | gene-YKR092C_ZTW1 | rna-NM_001179882.3_ZTW1 | cds-NP_013018.3_ZTW1 | 97.4 | 98.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:634019-635140:- | gene-YKR092C_Sparadoxus | rna-NM_001179882.3_Sparadoxus | cds-NP_013018.3_Sparadoxus | 77.2 | 89.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |