Gene name: SRP21
Reference locus (S288C): YKL122C
Gene biotype: protein_coding
Description: Subunit of the signal recognition particle (SRP); SRP functions in protein targeting to the endoplasmic reticulum membrane; not found in mammalian SRP; forms a pre-SRP structure in the nucleolus that is translocated to the cytoplasm
Top 10 interactors (score): SRP14 (0.998); SRP72 (0.998); SEC65 (0.997); SRP54 (0.997); SRP68 (0.995); SRP102 (0.836); SRP101 (0.813); NTG1 (0.679); LHP1 (0.515); YJR027W (0.499); L9001 (0.482)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:199069-199572:- | gene-YKL122C_AKU4011 | rna-NM_001179688.1_AKU4011 | cds-NP_012800.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:176191-176694:- | gene-YKL122C_BG1 | rna-NM_001179688.1_BG1 | cds-NP_012800.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:216983-217486:- | gene-YKL122C_Bruggeman | rna-NM_001179688.1_Bruggeman | cds-NP_012800.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:212037-212540:- | gene-YKL122C_CAT1 | rna-NM_001179688.1_CAT1 | cds-NP_012800.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:211302-211805:- | gene-YKL122C_CBS1585 | rna-NM_001179688.1_CBS1585 | cds-NP_012800.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:209889-210392:- | gene-YKL122C_CBS436 | rna-NM_001179688.1_CBS436 | cds-NP_012800.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:195931-196434:- | gene-YKL122C_CBS6412 | rna-NM_001179688.1_CBS6412 | cds-NP_012800.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:211765-212268:- | gene-YKL122C_CBS6413 | rna-NM_001179688.1_CBS6413 | cds-NP_012800.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:212136-212639:- | gene-YKL122C_CENPK1137D | rna-NM_001179688.1_CENPK1137D | cds-NP_012800.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:209800-210303:- | gene-YKL122C_EthanolRed | rna-NM_001179688.1_EthanolRed | cds-NP_012800.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:210613-211116:- | gene-YKL122C_FaliES1 | rna-NM_001179688.1_FaliES1 | cds-NP_012800.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000357.1:32910-33411:- | gene-YKL122C_JAY291 | rna-NM_001179688.1_JAY291 | cds-NP_012800.1_JAY291 | 99.0 | 99.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:218804-219307:- | gene-YKL122C_MUCL30387 | rna-NM_001179688.1_MUCL30387 | cds-NP_012800.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:213175-213678:- | gene-YKL122C_MUCL30388 | rna-NM_001179688.1_MUCL30388 | cds-NP_012800.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:211095-211598:- | gene-YKL122C_MUCL39482 | rna-NM_001179688.1_MUCL39482 | cds-NP_012800.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:215470-215973:- | gene-YKL122C_MUCL42920 | rna-NM_001179688.1_MUCL42920 | cds-NP_012800.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:212484-212987:- | gene-YKL122C_NCIM3186 | rna-NM_001179688.1_NCIM3186 | cds-NP_012800.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:211277-211780:- | gene-YKL122C_NCYC1407 | rna-NM_001179688.1_NCYC1407 | cds-NP_012800.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:218377-218880:- | gene-YKL122C_PE2H3 | rna-NM_001179688.1_PE2H3 | cds-NP_012800.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:214663-215166:- | gene-YKL122C_PE2H4 | rna-NM_001179688.1_PE2H4 | cds-NP_012800.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:212495-212998:- | gene-YKL122C_S288C | rna-NM_001179688.1_S288C | cds-NP_012800.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:128617-129120:- | gene-YKL122C_SA1 | rna-NM_001179688.1_SA1 | cds-NP_012800.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:211313-211816:- | gene-YKL122C_ThermosaccDry | rna-NM_001179688.1_ThermosaccDry | cds-NP_012800.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:210628-211131:- | gene-YKL122C_VR1 | rna-NM_001179688.1_VR1 | cds-NP_012800.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:209844-210347:- | gene-YKL122C_ZTW1 | rna-NM_001179688.1_ZTW1 | cds-NP_012800.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:227369-227878:- | gene-YKL122C_Sparadoxus | rna-NM_001179688.1_Sparadoxus | cds-NP_012800.1_Sparadoxus | 88.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |