Gene name: SRO9
Reference locus (S288C): YCL037C
Gene biotype: protein_coding
Description: Cytoplasmic RNA-binding protein; shuttles between nucleus and cytoplasm and is exported from the nucleus in an mRNA export-dependent manner; associates with translating ribosomes; involved in heme regulation of Hap1p as a component of the HMC complex, also involved in the organization of actin filaments; contains a La motif; SRO9 has a paralog, SLF1, that arose from the whole genome duplication
Top 10 interactors (score): CAF20 (0.963); PAB1 (0.951); SLF1 (0.936); CDC33 (0.935); TIF4631 (0.926); NOP58 (0.866); GIS2 (0.854); LHP1 (0.827); CBF5 (0.818); ASC1 (0.809); TIF11 (0.806); TIF3 (0.759); NOP1 (0.756); RBG2 (0.753); SCP160 (0.739); RPS3 (0.736); YDJ1 (0.733); SBP1 (0.729); PUF3 (0.726); CBP6 (0.721)
Homologues (species, bitscore): LARP1B (Homo sapiens, 68.6); ENSMUSP00000037127 (Mus musculus, 68.9); larp1 (Danio rerio, 66.2); larp1b (Xenopus tropicalis, 68.9); larp (Drosophila melanogaster, 59.7); larp-1 (Caenorhabditis elegans, 61.6); LARP1b (Arabidopsis thaliana, 68.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:58736-60040:- | gene-YCL037C_AKU4011 | rna-NM_001178682.1_AKU4011 | cds-NP_009893.2_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:87074-88378:+ | gene-YCL037C_BG1 | rna-NM_001178682.1_BG1 | cds-NP_009893.2_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:46927-48231:- | gene-YCL037C_Bruggeman | rna-NM_001178682.1_Bruggeman | cds-NP_009893.2_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:58531-59835:- | gene-YCL037C_CAT1 | rna-NM_001178682.1_CAT1 | cds-NP_009893.2_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:59423-60727:- | gene-YCL037C_CBS1585 | rna-NM_001178682.1_CBS1585 | cds-NP_009893.2_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:57870-59174:- | gene-YCL037C_CBS436 | rna-NM_001178682.1_CBS436 | cds-NP_009893.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:46825-48129:- | gene-YCL037C_CBS6412 | rna-NM_001178682.1_CBS6412 | cds-NP_009893.2_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:58197-59501:- | gene-YCL037C_CBS6413 | rna-NM_001178682.1_CBS6413 | cds-NP_009893.2_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:56953-58257:- | gene-YCL037C_CENPK1137D | rna-NM_001178682.1_CENPK1137D | cds-NP_009893.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:56758-58062:- | gene-YCL037C_EthanolRed | rna-NM_001178682.1_EthanolRed | cds-NP_009893.2_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:57698-59002:- | gene-YCL037C_FaliES1 | rna-NM_001178682.1_FaliES1 | cds-NP_009893.2_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000225.1:25380-26684:+ | gene-YCL037C_JAY291 | rna-NM_001178682.1_JAY291 | cds-NP_009893.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:45123-46427:- | gene-YCL037C_MUCL30387 | rna-NM_001178682.1_MUCL30387 | cds-NP_009893.2_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:45396-46700:- | gene-YCL037C_MUCL30388 | rna-NM_001178682.1_MUCL30388 | cds-NP_009893.2_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:59792-61096:- | gene-YCL037C_MUCL39482 | rna-NM_001178682.1_MUCL39482 | cds-NP_009893.2_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:45908-47212:- | gene-YCL037C_MUCL42920 | rna-NM_001178682.1_MUCL42920 | cds-NP_009893.2_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:57006-58310:- | gene-YCL037C_NCIM3186 | rna-NM_001178682.1_NCIM3186 | cds-NP_009893.2_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:60280-61584:- | gene-YCL037C_NCYC1407 | rna-NM_001178682.1_NCYC1407 | cds-NP_009893.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:57827-59131:- | gene-YCL037C_PE2H3 | rna-NM_001178682.1_PE2H3 | cds-NP_009893.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:57784-59088:- | gene-YCL037C_PE2H4 | rna-NM_001178682.1_PE2H4 | cds-NP_009893.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:57374-58678:- | gene-YCL037C_S288C | rna-NM_001178682.1_S288C | cds-NP_009893.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000061.1:44511-45815:- | gene-YCL037C_SA1 | rna-NM_001178682.1_SA1 | cds-NP_009893.2_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:58019-59323:- | gene-YCL037C_ThermosaccDry | rna-NM_001178682.1_ThermosaccDry | cds-NP_009893.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:64316-65620:- | gene-YCL037C_VR1 | rna-NM_001178682.1_VR1 | cds-NP_009893.2_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:58219-59523:- | gene-YCL037C_ZTW1 | rna-NM_001178682.1_ZTW1 | cds-NP_009893.2_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:87747-89051:- | gene-YCL037C_Sparadoxus | rna-NM_001178682.1_Sparadoxus | cds-NP_009893.2_Sparadoxus | 92.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |