Gene name: SRN2
Reference locus (S288C): YLR119W
Gene biotype: protein_coding
Description: Protein SRN2; Component of the ESCRT-I complex; ESCRT-I is involved in ubiquitin-dependent sorting of proteins into the endosome; suppressor of rna1-1 mutation; may be involved in RNA export from nucleus; Belongs to the VPS37 family
Top 10 interactors (score): STP22 (0.999); MVB12 (0.999); VPS28 (0.999); VPS20 (0.992); VPS36 (0.991); DID4 (0.989); SNF7 (0.988); VPS25 (0.988); VPS24 (0.987); SNF8 (0.985); VPS27 (0.967); HSE1 (0.927); BRO1 (0.817); END3 (0.78); DOA4 (0.715); DID2 (0.711); VTA1 (0.676); VPS16 (0.655); VPS33 (0.647); VPS51 (0.61)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:368017-368657:+ | gene-YLR119W_AKU4011 | rna-NM_001182006.1_AKU4011 | cds-NP_013220.1_AKU4011 | 98.4 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:331795-332434:+ | gene-YLR119W_BG1 | rna-NM_001182006.1_BG1 | cds-NP_013220.1_BG1 | 99.5 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:379141-379781:+ | gene-YLR119W_Bruggeman | rna-NM_001182006.1_Bruggeman | cds-NP_013220.1_Bruggeman | 98.1 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:379058-379698:+ | gene-YLR119W_CAT1 | rna-NM_001182006.1_CAT1 | cds-NP_013220.1_CAT1 | 98.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:375160-375800:+ | gene-YLR119W_CBS1585 | rna-NM_001182006.1_CBS1585 | cds-NP_013220.1_CBS1585 | 98.4 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:365400-366039:+ | gene-YLR119W_CBS436 | rna-NM_001182006.1_CBS436 | cds-NP_013220.1_CBS436 | 99.5 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:373578-374218:+ | gene-YLR119W_CBS6412 | rna-NM_001182006.1_CBS6412 | cds-NP_013220.1_CBS6412 | 98.4 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:375426-376066:+ | gene-YLR119W_CBS6413 | rna-NM_001182006.1_CBS6413 | cds-NP_013220.1_CBS6413 | 98.2 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:370556-371197:+ | gene-YLR119W_CENPK1137D | rna-NM_001182006.1_CENPK1137D | cds-NP_013220.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:368217-368857:+ | gene-YLR119W_EthanolRed | rna-NM_001182006.1_EthanolRed | cds-NP_013220.1_EthanolRed | 98.4 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:367728-368368:+ | gene-YLR119W_FaliES1 | rna-NM_001182006.1_FaliES1 | cds-NP_013220.1_FaliES1 | 98.4 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000117.1:24828-25467:- | gene-YLR119W_JAY291 | rna-NM_001182006.1_JAY291 | cds-NP_013220.1_JAY291 | 99.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:375433-376073:+ | gene-YLR119W_MUCL30387 | rna-NM_001182006.1_MUCL30387 | cds-NP_013220.1_MUCL30387 | 98.4 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:384214-384854:+ | gene-YLR119W_MUCL30388 | rna-NM_001182006.1_MUCL30388 | cds-NP_013220.1_MUCL30388 | 99.2 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:375669-376309:+ | gene-YLR119W_MUCL39482 | rna-NM_001182006.1_MUCL39482 | cds-NP_013220.1_MUCL39482 | 98.4 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:375795-376435:+ | gene-YLR119W_MUCL42920 | rna-NM_001182006.1_MUCL42920 | cds-NP_013220.1_MUCL42920 | 98.4 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:385508-386149:+ | gene-YLR119W_NCIM3186 | rna-NM_001182006.1_NCIM3186 | cds-NP_013220.1_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:367942-368582:+ | gene-YLR119W_NCYC1407 | rna-NM_001182006.1_NCYC1407 | cds-NP_013220.1_NCYC1407 | 98.4 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:373505-374144:+ | gene-YLR119W_PE2H3 | rna-NM_001182006.1_PE2H3 | cds-NP_013220.1_PE2H3 | 99.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:373246-373885:+ | gene-YLR119W_PE2H4 | rna-NM_001182006.1_PE2H4 | cds-NP_013220.1_PE2H4 | 99.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:385534-386175:+ | gene-YLR119W_S288C | rna-NM_001182006.1_S288C | cds-NP_013220.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000055.1:11409-12049:+ | gene-YLR119W_SA1 | rna-NM_001182006.1_SA1 | cds-NP_013220.1_SA1 | 98.2 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:368938-369578:+ | gene-YLR119W_ThermosaccDry | rna-NM_001182006.1_ThermosaccDry | cds-NP_013220.1_ThermosaccDry | 98.4 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:381400-382039:+ | gene-YLR119W_VR1 | rna-NM_001182006.1_VR1 | cds-NP_013220.1_VR1 | 99.6 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:366737-367377:+ | gene-YLR119W_ZTW1 | rna-NM_001182006.1_ZTW1 | cds-NP_013220.1_ZTW1 | 98.4 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:376567-377206:+ | gene-YLR119W_Sparadoxus | rna-NM_001182006.1_Sparadoxus | cds-NP_013220.1_Sparadoxus | 86.7 | 99.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |