Gene name: SRM1
Reference locus (S288C): YGL097W
Gene biotype: protein_coding
Description: Nucleotide exchange factor for Gsp1p; localizes to the nucleus, required for nucleocytoplasmic trafficking of macromolecules; suppressor of the pheromone response pathway; potentially phosphorylated by Cdc28p; human homolog of the RAN GEF, RCC1, can complement a temperature sensitive point mutant
Top 10 interactors (score): RNA1 (0.999); GSP1 (0.999); KAP95 (0.999); CRM1 (0.999); GSP2 (0.999); SRP1 (0.999); NTF2 (0.997); YRB1 (0.995); HTZ1 (0.986); NUP2 (0.972); GTR1 (0.945); DIS3 (0.935); NIC96 (0.912); MCM5 (0.907); YRB2 (0.896); NUP84 (0.877); NUP60 (0.862); NUP1 (0.862); TUB4 (0.844); PRP11 (0.83)
Homologues (species, bitscore): RCC1 (Homo sapiens, 153.3); Rcc1 (Mus musculus, 155.6); rcc1 (Danio rerio, 169.5); rcc1 (Xenopus tropicalis, 162.2); Rcc1 (Drosophila melanogaster, 145.2); ran-3 (Caenorhabditis elegans, 104.8); UVR8 (Arabidopsis thaliana, 110.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:324751-326199:+ | gene-YGL097W_AKU4011 | rna-NM_001180962.1_AKU4011 | cds-NP_011418.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:79169-80617:- | gene-YGL097W_BG1 | rna-NM_001180962.1_BG1 | cds-NP_011418.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:327255-328703:+ | gene-YGL097W_Bruggeman | rna-NM_001180962.1_Bruggeman | cds-NP_011418.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:322789-324237:+ | gene-YGL097W_CAT1 | rna-NM_001180962.1_CAT1 | cds-NP_011418.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:328075-329523:+ | gene-YGL097W_CBS1585 | rna-NM_001180962.1_CBS1585 | cds-NP_011418.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:322372-323820:+ | gene-YGL097W_CBS436 | rna-NM_001180962.1_CBS436 | cds-NP_011418.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:312454-313902:+ | gene-YGL097W_CBS6412 | rna-NM_001180962.1_CBS6412 | cds-NP_011418.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:322379-323827:+ | gene-YGL097W_CBS6413 | rna-NM_001180962.1_CBS6413 | cds-NP_011418.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:321963-323411:+ | gene-YGL097W_CENPK1137D | rna-NM_001180962.1_CENPK1137D | cds-NP_011418.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:313834-315282:+ | gene-YGL097W_EthanolRed | rna-NM_001180962.1_EthanolRed | cds-NP_011418.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:316395-317843:+ | gene-YGL097W_FaliES1 | rna-NM_001180962.1_FaliES1 | cds-NP_011418.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000369.1:2047-3495:+ | gene-YGL097W_JAY291 | rna-NM_001180962.1_JAY291 | cds-NP_011418.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:324225-325673:+ | gene-YGL097W_MUCL30387 | rna-NM_001180962.1_MUCL30387 | cds-NP_011418.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:327214-328662:+ | gene-YGL097W_MUCL30388 | rna-NM_001180962.1_MUCL30388 | cds-NP_011418.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:324602-326050:+ | gene-YGL097W_MUCL39482 | rna-NM_001180962.1_MUCL39482 | cds-NP_011418.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:328888-330336:+ | gene-YGL097W_MUCL42920 | rna-NM_001180962.1_MUCL42920 | cds-NP_011418.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:321782-323230:+ | gene-YGL097W_NCIM3186 | rna-NM_001180962.1_NCIM3186 | cds-NP_011418.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:316139-317587:+ | gene-YGL097W_NCYC1407 | rna-NM_001180962.1_NCYC1407 | cds-NP_011418.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:317825-319273:+ | gene-YGL097W_PE2H3 | rna-NM_001180962.1_PE2H3 | cds-NP_011418.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:322823-324271:+ | gene-YGL097W_PE2H4 | rna-NM_001180962.1_PE2H4 | cds-NP_011418.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:321782-323230:+ | gene-YGL097W_S288C | rna-NM_001180962.1_S288C | cds-NP_011418.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:66567-68015:+ | gene-YGL097W_SA1 | rna-NM_001180962.1_SA1 | cds-NP_011418.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:316648-318096:+ | gene-YGL097W_ThermosaccDry | rna-NM_001180962.1_ThermosaccDry | cds-NP_011418.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:426539-427987:+ | gene-YGL097W_VR1 | rna-NM_001180962.1_VR1 | cds-NP_011418.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:314006-315454:+ | gene-YGL097W_ZTW1 | rna-NM_001180962.1_ZTW1 | cds-NP_011418.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:319648-321096:+ | gene-YGL097W_Sparadoxus | rna-NM_001180962.1_Sparadoxus | cds-NP_011418.1_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |