Gene name: SRF1
Reference locus (S288C): YDL133W
Gene biotype: protein_coding
Description: Regulator of phospholipase D (Spo14p); interacts with Spo14p and regulates its catalytic activity; capable of buffering the toxicity of C16:0 platelet activating factor, a lipid that accumulates intraneuronally in Alzheimer's patients
Top 10 interactors (score): YDR509W (0.899); RRG9 (0.813); YDL129W (0.76); IRC19 (0.748); SDH5 (0.696); KES1 (0.621); RPP2A (0.611); PIL1 (0.582); BUR6 (0.574); RRG7 (0.573); ATG34 (0.572); RRG8 (0.569); GEP5 (0.563); SEC14 (0.544); YDR114C (0.526); SOL3 (0.526); GCS1 (0.526); GTF1 (0.499); YNL184C (0.452); SPO14 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:207070-208383:+ | gene-YDL133W_AKU4011 | rna-NM_001180192.1_AKU4011 | cds-NP_010149.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:341587-342900:- | gene-YDL133W_BG1 | rna-NM_001180192.1_BG1 | cds-NP_010149.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:223739-225052:+ | gene-YDL133W_Bruggeman | rna-NM_001180192.1_Bruggeman | cds-NP_010149.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:127334-128647:+ | gene-YDL133W_CAT1 | rna-NM_001180192.1_CAT1 | cds-NP_010149.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:205333-206646:+ | gene-YDL133W_CBS1585 | rna-NM_001180192.1_CBS1585 | cds-NP_010149.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:222000-223313:+ | gene-YDL133W_CBS436 | rna-NM_001180192.1_CBS436 | cds-NP_010149.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:204137-205450:+ | gene-YDL133W_CBS6412 | rna-NM_001180192.1_CBS6412 | cds-NP_010149.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:223495-224808:+ | gene-YDL133W_CBS6413 | rna-NM_001180192.1_CBS6413 | cds-NP_010149.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:221077-222390:+ | gene-YDL133W_CENPK1137D | rna-NM_001180192.1_CENPK1137D | cds-NP_010149.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:218101-219414:+ | gene-YDL133W_EthanolRed | rna-NM_001180192.1_EthanolRed | cds-NP_010149.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:223822-225135:+ | gene-YDL133W_FaliES1 | rna-NM_001180192.1_FaliES1 | cds-NP_010149.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000204.1:3968-5281:- | gene-YDL133W_JAY291 | rna-NM_001180192.1_JAY291 | cds-NP_010149.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:222187-223500:+ | gene-YDL133W_MUCL30387 | rna-NM_001180192.1_MUCL30387 | cds-NP_010149.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:213055-214368:+ | gene-YDL133W_MUCL30388 | rna-NM_001180192.1_MUCL30388 | cds-NP_010149.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:206187-207500:+ | gene-YDL133W_MUCL39482 | rna-NM_001180192.1_MUCL39482 | cds-NP_010149.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000146.1:4117-5430:- | gene-YDL133W_MUCL42920 | rna-NM_001180192.1_MUCL42920 | cds-NP_010149.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:222350-223663:+ | gene-YDL133W_NCIM3186 | rna-NM_001180192.1_NCIM3186 | cds-NP_010149.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:206468-207781:+ | gene-YDL133W_NCYC1407 | rna-NM_001180192.1_NCYC1407 | cds-NP_010149.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:213227-214540:+ | gene-YDL133W_PE2H3 | rna-NM_001180192.1_PE2H3 | cds-NP_010149.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:213231-214544:+ | gene-YDL133W_PE2H4 | rna-NM_001180192.1_PE2H4 | cds-NP_010149.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:222427-223740:+ | gene-YDL133W_S288C | rna-NM_001180192.1_S288C | cds-NP_010149.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000043.1:87991-89304:+ | gene-YDL133W_SA1 | rna-NM_001180192.1_SA1 | cds-NP_010149.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:223583-224896:+ | gene-YDL133W_ThermosaccDry | rna-NM_001180192.1_ThermosaccDry | cds-NP_010149.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:225202-226515:+ | gene-YDL133W_VR1 | rna-NM_001180192.1_VR1 | cds-NP_010149.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:221511-222824:+ | gene-YDL133W_ZTW1 | rna-NM_001180192.1_ZTW1 | cds-NP_010149.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:223609-224922:+ | gene-YDL133W_Sparadoxus | rna-NM_001180192.1_Sparadoxus | cds-NP_010149.1_Sparadoxus | 89.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |