Gene name: SRD1
Reference locus (S288C): YCR018C
Gene biotype: protein_coding
Description: Pre-rRNA-processing protein SRD1; Protein involved in the processing of pre-rRNA to mature rRNA; contains a C2/C2 zinc finger motif; srd1 mutation suppresses defects caused by the rrp1-1 mutation
Top 10 interactors (score): YCL068C (0.747); YCL001W-B (0.711); ZRG8 (0.694); YER134C (0.69); GAT3 (0.67); HHY1 (0.67); RRP1 (0.624); YCL049C (0.615); CTO1 (0.613); YCR007C (0.575); BAS1 (0.53); YCR016W (0.526); ARB1 (0.526); TRM44 (0.525); YCR024C-B (0.525); YCL042W (0.525); SOL2 (0.522); MCM1 (0.508); ARG80 (0.508); SMP1 (0.498)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:142711-143376:- | gene-YCR018C_AKU4011 | rna-NM_001178731.1_AKU4011 | cds-NP_009944.2_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000178.1:2729-3394:+ | gene-YCR018C_BG1 | rna-NM_001178731.1_BG1 | cds-NP_009944.2_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:139024-139691:- | gene-YCR018C_Bruggeman | rna-NM_001178731.1_Bruggeman | cds-NP_009944.2_Bruggeman | 99.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:149074-149739:- | gene-YCR018C_CAT1 | rna-NM_001178731.1_CAT1 | cds-NP_009944.2_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | MBVS01000051.1:1173-1838:+ | gene-YCR018C_CBS1585 | rna-NM_001178731.1_CBS1585 | cds-NP_009944.2_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:148623-149288:- | gene-YCR018C_CBS436 | rna-NM_001178731.1_CBS436 | cds-NP_009944.2_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:130826-131491:- | gene-YCR018C_CBS6412 | rna-NM_001178731.1_CBS6412 | cds-NP_009944.2_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:143157-143822:- | gene-YCR018C_CBS6413 | rna-NM_001178731.1_CBS6413 | cds-NP_009944.2_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:129098-129763:- | gene-YCR018C_CENPK1137D | rna-NM_001178731.1_CENPK1137D | cds-NP_009944.2_CENPK1137D | 57.0 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:140731-141396:- | gene-YCR018C_EthanolRed | rna-NM_001178731.1_EthanolRed | cds-NP_009944.2_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:143527-144192:- | gene-YCR018C_FaliES1 | rna-NM_001178731.1_FaliES1 | cds-NP_009944.2_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000232.1:2649-3314:+ | gene-YCR018C_JAY291 | rna-NM_001178731.1_JAY291 | cds-NP_009944.2_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:136331-136996:- | gene-YCR018C_MUCL30387 | rna-NM_001178731.1_MUCL30387 | cds-NP_009944.2_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:135200-135865:- | gene-YCR018C_MUCL30388 | rna-NM_001178731.1_MUCL30388 | cds-NP_009944.2_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:143780-144445:- | gene-YCR018C_MUCL39482 | rna-NM_001178731.1_MUCL39482 | cds-NP_009944.2_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:139847-140512:- | gene-YCR018C_MUCL42920 | rna-NM_001178731.1_MUCL42920 | cds-NP_009944.2_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:147870-148535:- | gene-YCR018C_NCIM3186 | rna-NM_001178731.1_NCIM3186 | cds-NP_009944.2_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:144510-145175:- | gene-YCR018C_NCYC1407 | rna-NM_001178731.1_NCYC1407 | cds-NP_009944.2_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:148357-149022:- | gene-YCR018C_PE2H3 | rna-NM_001178731.1_PE2H3 | cds-NP_009944.2_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:148895-149560:- | gene-YCR018C_PE2H4 | rna-NM_001178731.1_PE2H4 | cds-NP_009944.2_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:148238-148903:- | gene-YCR018C_S288C | rna-NM_001178731.1_S288C | cds-NP_009944.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000073.1:2766-3431:+ | gene-YCR018C_SA1 | rna-NM_001178731.1_SA1 | cds-NP_009944.2_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:143596-144261:- | gene-YCR018C_ThermosaccDry | rna-NM_001178731.1_ThermosaccDry | cds-NP_009944.2_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:154426-155091:- | gene-YCR018C_VR1 | rna-NM_001178731.1_VR1 | cds-NP_009944.2_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:142532-143197:- | gene-YCR018C_ZTW1 | rna-NM_001178731.1_ZTW1 | cds-NP_009944.2_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:175964-176630:- | gene-YCR018C_Sparadoxus | rna-NM_001178731.1_Sparadoxus | cds-NP_009944.2_Sparadoxus | 85.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |