Gene name: SRB6
Reference locus (S288C): YBR253W
Gene biotype: protein_coding
Description: Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation
Top 10 interactors (score): SRB4 (0.999); MED7 (0.999); SRB5 (0.999); NUT2 (0.999); MED8 (0.999); SRB2 (0.999); MED11 (0.999); SRB7 (0.999); RGR1 (0.998); MED4 (0.998); CSE2 (0.998); MED6 (0.998); SOH1 (0.998); ROX3 (0.996); PGD1 (0.994); GAL11 (0.994); SIN4 (0.993); MED1 (0.991); MED2 (0.989); RPO21 (0.966)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:707559-707924:+ | gene-YBR253W_AKU4011 | rna-NM_001178601.1_AKU4011 | cds-NP_009812.1_AKU4011 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:78577-78942:+ | gene-YBR253W_BG1 | rna-NM_001178601.1_BG1 | cds-NP_009812.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:708721-709086:+ | gene-YBR253W_Bruggeman | rna-NM_001178601.1_Bruggeman | cds-NP_009812.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:712475-712840:+ | gene-YBR253W_CAT1 | rna-NM_001178601.1_CAT1 | cds-NP_009812.1_CAT1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:699125-699490:+ | gene-YBR253W_CBS1585 | rna-NM_001178601.1_CBS1585 | cds-NP_009812.1_CBS1585 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:705566-705931:+ | gene-YBR253W_CBS436 | rna-NM_001178601.1_CBS436 | cds-NP_009812.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:793740-794105:+ | gene-YBR253W_CBS6412 | rna-NM_001178601.1_CBS6412 | cds-NP_009812.1_CBS6412 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:705173-705538:+ | gene-YBR253W_CBS6413 | rna-NM_001178601.1_CBS6413 | cds-NP_009812.1_CBS6413 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:717177-717542:+ | gene-YBR253W_CENPK1137D | rna-NM_001178601.1_CENPK1137D | cds-NP_009812.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:830592-830957:+ | gene-YBR253W_EthanolRed | rna-NM_001178601.1_EthanolRed | cds-NP_009812.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:723939-724304:+ | gene-YBR253W_FaliES1 | rna-NM_001178601.1_FaliES1 | cds-NP_009812.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:79749-80114:- | gene-YBR253W_JAY291 | rna-NM_001178601.1_JAY291 | cds-NP_009812.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:710764-711129:+ | gene-YBR253W_MUCL30387 | rna-NM_001178601.1_MUCL30387 | cds-NP_009812.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:727847-728212:+ | gene-YBR253W_MUCL30388 | rna-NM_001178601.1_MUCL30388 | cds-NP_009812.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:697432-697797:+ | gene-YBR253W_MUCL39482 | rna-NM_001178601.1_MUCL39482 | cds-NP_009812.1_MUCL39482 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:707300-707665:+ | gene-YBR253W_MUCL42920 | rna-NM_001178601.1_MUCL42920 | cds-NP_009812.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:723067-723432:+ | gene-YBR253W_NCIM3186 | rna-NM_001178601.1_NCIM3186 | cds-NP_009812.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:699321-699686:+ | gene-YBR253W_NCYC1407 | rna-NM_001178601.1_NCYC1407 | cds-NP_009812.1_NCYC1407 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:722450-722815:+ | gene-YBR253W_PE2H3 | rna-NM_001178601.1_PE2H3 | cds-NP_009812.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:720126-720491:+ | gene-YBR253W_PE2H4 | rna-NM_001178601.1_PE2H4 | cds-NP_009812.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:723270-723635:+ | gene-YBR253W_S288C | rna-NM_001178601.1_S288C | cds-NP_009812.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:78398-78763:+ | gene-YBR253W_SA1 | rna-NM_001178601.1_SA1 | cds-NP_009812.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:722931-723296:+ | gene-YBR253W_ThermosaccDry | rna-NM_001178601.1_ThermosaccDry | cds-NP_009812.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:703147-703512:+ | gene-YBR253W_VR1 | rna-NM_001178601.1_VR1 | cds-NP_009812.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:695780-696145:+ | gene-YBR253W_ZTW1 | rna-NM_001178601.1_ZTW1 | cds-NP_009812.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:739687-740052:+ | gene-YBR253W_Sparadoxus | rna-NM_001178601.1_Sparadoxus | cds-NP_009812.1_Sparadoxus | 89.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |