Gene name: SRB5
Reference locus (S288C): YGR104C
Gene biotype: protein_coding
Description: Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; required for proper termination of transcription for some genes; involved in telomere maintenance
Top 10 interactors (score): MED11 (0.999); MED8 (0.999); SRB4 (0.999); SRB6 (0.999); SRB2 (0.999); RGR1 (0.999); CSE2 (0.999); ROX3 (0.999); GAL11 (0.999); MED7 (0.999); MED6 (0.999); NUT2 (0.999); MED2 (0.998); SOH1 (0.998); MED4 (0.998); PGD1 (0.998); SIN4 (0.997); SRB7 (0.997); MED1 (0.997); RPO21 (0.989)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:681625-682548:- | gene-YGR104C_AKU4011 | rna-NM_001181233.3_AKU4011 | cds-NP_011618.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:117486-118409:- | gene-YGR104C_BG1 | rna-NM_001181233.3_BG1 | cds-NP_011618.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:683815-684738:- | gene-YGR104C_Bruggeman | rna-NM_001181233.3_Bruggeman | cds-NP_011618.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:682006-682929:- | gene-YGR104C_CAT1 | rna-NM_001181233.3_CAT1 | cds-NP_011618.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:682593-683516:- | gene-YGR104C_CBS1585 | rna-NM_001181233.3_CBS1585 | cds-NP_011618.3_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:684248-685171:- | gene-YGR104C_CBS436 | rna-NM_001181233.3_CBS436 | cds-NP_011618.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:674297-675220:- | gene-YGR104C_CBS6412 | rna-NM_001181233.3_CBS6412 | cds-NP_011618.3_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:679230-680153:- | gene-YGR104C_CBS6413 | rna-NM_001181233.3_CBS6413 | cds-NP_011618.3_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:697116-698039:- | gene-YGR104C_CENPK1137D | rna-NM_001181233.3_CENPK1137D | cds-NP_011618.3_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:669215-670138:- | gene-YGR104C_EthanolRed | rna-NM_001181233.3_EthanolRed | cds-NP_011618.3_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:673023-673946:- | gene-YGR104C_FaliES1 | rna-NM_001181233.3_FaliES1 | cds-NP_011618.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000396.1:2607-3530:+ | gene-YGR104C_JAY291 | rna-NM_001181233.3_JAY291 | cds-NP_011618.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:680804-681727:- | gene-YGR104C_MUCL30387 | rna-NM_001181233.3_MUCL30387 | cds-NP_011618.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:683615-684538:- | gene-YGR104C_MUCL30388 | rna-NM_001181233.3_MUCL30388 | cds-NP_011618.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:678324-679247:- | gene-YGR104C_MUCL39482 | rna-NM_001181233.3_MUCL39482 | cds-NP_011618.3_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:688627-689550:- | gene-YGR104C_MUCL42920 | rna-NM_001181233.3_MUCL42920 | cds-NP_011618.3_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:697445-698368:- | gene-YGR104C_NCIM3186 | rna-NM_001181233.3_NCIM3186 | cds-NP_011618.3_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:673013-673936:- | gene-YGR104C_NCYC1407 | rna-NM_001181233.3_NCYC1407 | cds-NP_011618.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:675696-676619:- | gene-YGR104C_PE2H3 | rna-NM_001181233.3_PE2H3 | cds-NP_011618.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:680815-681738:- | gene-YGR104C_PE2H4 | rna-NM_001181233.3_PE2H4 | cds-NP_011618.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:697445-698368:- | gene-YGR104C_S288C | rna-NM_001181233.3_S288C | cds-NP_011618.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:124054-124977:- | gene-YGR104C_SA1 | rna-NM_001181233.3_SA1 | cds-NP_011618.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:693392-694315:- | gene-YGR104C_ThermosaccDry | rna-NM_001181233.3_ThermosaccDry | cds-NP_011618.3_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:789884-790807:- | gene-YGR104C_VR1 | rna-NM_001181233.3_VR1 | cds-NP_011618.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:147640-148563:- | gene-YGR104C_ZTW1 | rna-NM_001181233.3_ZTW1 | cds-NP_011618.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:683408-684331:- | gene-YGR104C_Sparadoxus | rna-NM_001181233.3_Sparadoxus | cds-NP_011618.3_Sparadoxus | 87.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |