Gene name: SQT1
Reference locus (S288C): YIR012W
Gene biotype: protein_coding
Description: Ribosome assembly protein SQT1; Specific chaperone for ribosomal protein Rpl10p; binds nascent Rpl10p during translation; contains multiple WD repeats; interacts with Qsr1p in a two-hybrid assay; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): YTM1 (0.998); RPL10 (0.997); MRT4 (0.996); RRS1 (0.994); RRB1 (0.994); BRX1 (0.993); ERB1 (0.993); NMD3 (0.992); HAS1 (0.992); RPF2 (0.992); ARX1 (0.988); NUG1 (0.985); NOG1 (0.985); RPL3 (0.981); NOP15 (0.978); NIP7 (0.977); RPF1 (0.976); NSA2 (0.969); RRP1 (0.968); TIF6 (0.967)
Homologues (species, bitscore): AAMP (Homo sapiens, 73.2); Aamp (Mus musculus, 79.0); aamp (Danio rerio, 91.7); aamp (Xenopus tropicalis, 90.9); CG5114 (Drosophila melanogaster, 86.3); Y111B2A.12 (Caenorhabditis elegans, 52.4); AT1G71840 (Arabidopsis thaliana, 76.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:377822-379117:+ | gene-YIR012W_AKU4011 | rna-NM_001179534.1_AKU4011 | cds-NP_012277.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000072.1:47451-48746:- | gene-YIR012W_BG1 | rna-NM_001179534.1_BG1 | cds-NP_012277.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:382247-383542:+ | gene-YIR012W_Bruggeman | rna-NM_001179534.1_Bruggeman | cds-NP_012277.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:368960-370255:+ | gene-YIR012W_CAT1 | rna-NM_001179534.1_CAT1 | cds-NP_012277.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:377857-379152:+ | gene-YIR012W_CBS1585 | rna-NM_001179534.1_CBS1585 | cds-NP_012277.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:370530-371825:+ | gene-YIR012W_CBS436 | rna-NM_001179534.1_CBS436 | cds-NP_012277.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:373340-374635:+ | gene-YIR012W_CBS6412 | rna-NM_001179534.1_CBS6412 | cds-NP_012277.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:369934-371229:+ | gene-YIR012W_CBS6413 | rna-NM_001179534.1_CBS6413 | cds-NP_012277.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:370545-371840:+ | gene-YIR012W_CENPK1137D | rna-NM_001179534.1_CENPK1137D | cds-NP_012277.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:360906-362201:+ | gene-YIR012W_EthanolRed | rna-NM_001179534.1_EthanolRed | cds-NP_012277.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:379633-380928:+ | gene-YIR012W_FaliES1 | rna-NM_001179534.1_FaliES1 | cds-NP_012277.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000009.1:11037-12332:- | gene-YIR012W_JAY291 | rna-NM_001179534.1_JAY291 | cds-NP_012277.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:379491-380786:+ | gene-YIR012W_MUCL30387 | rna-NM_001179534.1_MUCL30387 | cds-NP_012277.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:376272-377567:+ | gene-YIR012W_MUCL30388 | rna-NM_001179534.1_MUCL30388 | cds-NP_012277.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:378492-379787:+ | gene-YIR012W_MUCL39482 | rna-NM_001179534.1_MUCL39482 | cds-NP_012277.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:382058-383353:+ | gene-YIR012W_MUCL42920 | rna-NM_001179534.1_MUCL42920 | cds-NP_012277.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:378486-379781:+ | gene-YIR012W_NCIM3186 | rna-NM_001179534.1_NCIM3186 | cds-NP_012277.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:382719-384014:+ | gene-YIR012W_NCYC1407 | rna-NM_001179534.1_NCYC1407 | cds-NP_012277.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:372540-373835:+ | gene-YIR012W_PE2H3 | rna-NM_001179534.1_PE2H3 | cds-NP_012277.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:367246-368541:+ | gene-YIR012W_PE2H4 | rna-NM_001179534.1_PE2H4 | cds-NP_012277.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:378486-379781:+ | gene-YIR012W_S288C | rna-NM_001179534.1_S288C | cds-NP_012277.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000066.1:53347-54642:+ | gene-YIR012W_SA1 | rna-NM_001179534.1_SA1 | cds-NP_012277.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:377237-378532:+ | gene-YIR012W_ThermosaccDry | rna-NM_001179534.1_ThermosaccDry | cds-NP_012277.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:373315-374610:+ | gene-YIR012W_VR1 | rna-NM_001179534.1_VR1 | cds-NP_012277.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:351233-352528:+ | gene-YIR012W_ZTW1 | rna-NM_001179534.1_ZTW1 | cds-NP_012277.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:372635-373927:+ | gene-YIR012W_Sparadoxus | rna-NM_001179534.1_Sparadoxus | cds-NP_012277.1_Sparadoxus | 90.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |