Gene name: SPT8
Reference locus (S288C): YLR055C
Gene biotype: protein_coding
Description: Transcription factor SPT8; Subunit of the SAGA transcriptional regulatory complex; not present in SAGA-like complex SLIK/SALSA; required for SAGA-mediated inhibition at some promoters
Top 10 interactors (score): HFI1 (0.999); UBP8 (0.999); GCN5 (0.999); SGF73 (0.999); TRA1 (0.999); SPT20 (0.999); SPT3 (0.999); TAF6 (0.999); TAF5 (0.999); NGG1 (0.999); SPT7 (0.999); SGF29 (0.998); TAF12 (0.998); SGF11 (0.997); ADA2 (0.997); SPT15 (0.996); TAF10 (0.995); TAF9 (0.994); SUS1 (0.99); CHD1 (0.971)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:233757-235565:- | gene-YLR055C_AKU4011 | rna-NM_001181942.1_AKU4011 | cds-NP_013156.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:196885-198687:- | gene-YLR055C_BG1 | rna-NM_001181942.1_BG1 | cds-NP_013156.1_BG1 | 98.3 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:243660-245477:- | gene-YLR055C_Bruggeman | rna-NM_001181942.1_Bruggeman | cds-NP_013156.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:243980-245782:- | gene-YLR055C_CAT1 | rna-NM_001181942.1_CAT1 | cds-NP_013156.1_CAT1 | 98.4 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:240892-242700:- | gene-YLR055C_CBS1585 | rna-NM_001181942.1_CBS1585 | cds-NP_013156.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:231512-233314:- | gene-YLR055C_CBS436 | rna-NM_001181942.1_CBS436 | cds-NP_013156.1_CBS436 | 98.3 | 99.1 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:239302-241110:- | gene-YLR055C_CBS6412 | rna-NM_001181942.1_CBS6412 | cds-NP_013156.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:241156-242964:- | gene-YLR055C_CBS6413 | rna-NM_001181942.1_CBS6413 | cds-NP_013156.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:230543-232339:- | gene-YLR055C_CENPK1137D | rna-NM_001181942.1_CENPK1137D | cds-NP_013156.1_CENPK1137D | 98.1 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:233269-235077:- | gene-YLR055C_EthanolRed | rna-NM_001181942.1_EthanolRed | cds-NP_013156.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:233157-234965:- | gene-YLR055C_FaliES1 | rna-NM_001181942.1_FaliES1 | cds-NP_013156.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:8083-9885:- | gene-YLR055C_JAY291 | rna-NM_001181942.1_JAY291 | cds-NP_013156.1_JAY291 | 98.3 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:241013-242830:- | gene-YLR055C_MUCL30387 | rna-NM_001181942.1_MUCL30387 | cds-NP_013156.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:248677-250485:- | gene-YLR055C_MUCL30388 | rna-NM_001181942.1_MUCL30388 | cds-NP_013156.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:241387-243195:- | gene-YLR055C_MUCL39482 | rna-NM_001181942.1_MUCL39482 | cds-NP_013156.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:241294-243102:- | gene-YLR055C_MUCL42920 | rna-NM_001181942.1_MUCL42920 | cds-NP_013156.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:251246-253054:- | gene-YLR055C_NCIM3186 | rna-NM_001181942.1_NCIM3186 | cds-NP_013156.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:233449-235257:- | gene-YLR055C_NCYC1407 | rna-NM_001181942.1_NCYC1407 | cds-NP_013156.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:239313-241121:- | gene-YLR055C_PE2H3 | rna-NM_001181942.1_PE2H3 | cds-NP_013156.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:239054-240862:- | gene-YLR055C_PE2H4 | rna-NM_001181942.1_PE2H4 | cds-NP_013156.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:251272-253080:- | gene-YLR055C_S288C | rna-NM_001181942.1_S288C | cds-NP_013156.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:77142-78932:- | gene-YLR055C_SA1 | rna-NM_001181942.1_SA1 | cds-NP_013156.1_SA1 | 98.6 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:233342-235150:- | gene-YLR055C_ThermosaccDry | rna-NM_001181942.1_ThermosaccDry | cds-NP_013156.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:247005-248812:- | gene-YLR055C_VR1 | rna-NM_001181942.1_VR1 | cds-NP_013156.1_VR1 | 84.7 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:232700-234514:- | gene-YLR055C_ZTW1 | rna-NM_001181942.1_ZTW1 | cds-NP_013156.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:241626-243395:- | gene-YLR055C_Sparadoxus | rna-NM_001181942.1_Sparadoxus | cds-NP_013156.1_Sparadoxus | 88.3 | 97.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |