Gene name: SPT7
Reference locus (S288C): YBR081C
Gene biotype: protein_coding
Description: Transcriptional activator SPT7; Subunit of the SAGA transcriptional regulatory complex; involved in proper assembly of the complex; also present as a C-terminally truncated form in the SLIK/SALSA transcriptional regulatory complex
Top 10 interactors (score): TAF10 (0.999); UBP8 (0.999); TRA1 (0.999); SGF11 (0.999); HFI1 (0.999); NGG1 (0.999); TAF5 (0.999); SPT3 (0.999); SGF29 (0.999); TAF6 (0.999); ADA2 (0.999); SPT8 (0.999); SPT20 (0.999); SGF73 (0.999); TAF12 (0.999); TAF9 (0.999); SUS1 (0.998); GCN5 (0.995); CHD1 (0.99); SPT15 (0.988)
Homologues (species, bitscore): CECR2 (Homo sapiens, 66.2); mCG_121508 (Mus musculus, 66.2); CECR2 (Danio rerio, 70.5); baz1a (Xenopus tropicalis, 68.9); fs(1)h (Drosophila melanogaster, 62.0); F13C5.2 (Caenorhabditis elegans, 57.4); HAF01 (Arabidopsis thaliana, 56.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:383628-387626:- | gene-YBR081C_AKU4011 | rna-NM_001178429.1_AKU4011 | cds-NP_009637.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:374617-378615:- | gene-YBR081C_BG1 | rna-NM_001178429.1_BG1 | cds-NP_009637.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:384864-388862:- | gene-YBR081C_Bruggeman | rna-NM_001178429.1_Bruggeman | cds-NP_009637.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:388183-392181:- | gene-YBR081C_CAT1 | rna-NM_001178429.1_CAT1 | cds-NP_009637.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:375912-379910:- | gene-YBR081C_CBS1585 | rna-NM_001178429.1_CBS1585 | cds-NP_009637.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:384021-388019:- | gene-YBR081C_CBS436 | rna-NM_001178429.1_CBS436 | cds-NP_009637.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:474142-478140:- | gene-YBR081C_CBS6412 | rna-NM_001178429.1_CBS6412 | cds-NP_009637.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:381052-385050:- | gene-YBR081C_CBS6413 | rna-NM_001178429.1_CBS6413 | cds-NP_009637.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:395011-399009:- | gene-YBR081C_CENPK1137D | rna-NM_001178429.1_CENPK1137D | cds-NP_009637.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:510419-514417:- | gene-YBR081C_EthanolRed | rna-NM_001178429.1_EthanolRed | cds-NP_009637.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:399702-403700:- | gene-YBR081C_FaliES1 | rna-NM_001178429.1_FaliES1 | cds-NP_009637.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000124.1:47630-51628:- | gene-YBR081C_JAY291 | rna-NM_001178429.1_JAY291 | cds-NP_009637.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:386018-390016:- | gene-YBR081C_MUCL30387 | rna-NM_001178429.1_MUCL30387 | cds-NP_009637.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:386048-390046:- | gene-YBR081C_MUCL30388 | rna-NM_001178429.1_MUCL30388 | cds-NP_009637.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:375904-379902:- | gene-YBR081C_MUCL39482 | rna-NM_001178429.1_MUCL39482 | cds-NP_009637.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:383118-387116:- | gene-YBR081C_MUCL42920 | rna-NM_001178429.1_MUCL42920 | cds-NP_009637.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:401050-405048:- | gene-YBR081C_NCIM3186 | rna-NM_001178429.1_NCIM3186 | cds-NP_009637.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:376836-380834:- | gene-YBR081C_NCYC1407 | rna-NM_001178429.1_NCYC1407 | cds-NP_009637.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:389080-393078:- | gene-YBR081C_PE2H3 | rna-NM_001178429.1_PE2H3 | cds-NP_009637.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:386756-390754:- | gene-YBR081C_PE2H4 | rna-NM_001178429.1_PE2H4 | cds-NP_009637.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:401253-405251:- | gene-YBR081C_S288C | rna-NM_001178429.1_S288C | cds-NP_009637.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:72267-76265:+ | gene-YBR081C_SA1 | rna-NM_001178429.1_SA1 | cds-NP_009637.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:398709-402707:- | gene-YBR081C_ThermosaccDry | rna-NM_001178429.1_ThermosaccDry | cds-NP_009637.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:380697-384695:- | gene-YBR081C_VR1 | rna-NM_001178429.1_VR1 | cds-NP_009637.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:374378-378376:- | gene-YBR081C_ZTW1 | rna-NM_001178429.1_ZTW1 | cds-NP_009637.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:411318-415310:- | gene-YBR081C_Sparadoxus | rna-NM_001178429.1_Sparadoxus | cds-NP_009637.1_Sparadoxus | 88.6 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |