Gene name: SPT3
Reference locus (S288C): YDR392W
Gene biotype: protein_coding
Description: Protein SPT3; Subunit of the SAGA and SAGA-like transcriptional regulatory complexes; interacts with Spt15p to activate transcription of some RNA polymerase II-dependent genes, also functions to inhibit transcription at some promoters; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): TAF10 (0.999); TRA1 (0.999); ADA2 (0.999); NGG1 (0.999); SPT7 (0.999); HFI1 (0.999); TAF5 (0.999); TAF6 (0.999); TAF9 (0.999); SGF29 (0.999); SGF11 (0.999); TAF12 (0.999); SGF73 (0.999); SPT20 (0.999); SPT15 (0.999); UBP8 (0.999); GCN5 (0.999); SPT8 (0.999); SUS1 (0.993); CHD1 (0.953)
Homologues (species, bitscore): SUPT3H (Homo sapiens, 103.2); Supt3 (Mus musculus, 109.0); supt3h (Danio rerio, 75.9); supt3h (Xenopus tropicalis, 68.9); TAF13 (Arabidopsis thaliana, 51.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1198836-1199849:+ | gene-YDR392W_AKU4011 | rna-NM_001180700.1_AKU4011 | cds-NP_010680.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:77322-78335:+ | gene-YDR392W_BG1 | rna-NM_001180700.1_BG1 | cds-NP_010680.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1229722-1230735:+ | gene-YDR392W_Bruggeman | rna-NM_001180700.1_Bruggeman | cds-NP_010680.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1208278-1209291:+ | gene-YDR392W_CAT1 | rna-NM_001180700.1_CAT1 | cds-NP_010680.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1193757-1194770:+ | gene-YDR392W_CBS1585 | rna-NM_001180700.1_CBS1585 | cds-NP_010680.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1212625-1213638:+ | gene-YDR392W_CBS436 | rna-NM_001180700.1_CBS436 | cds-NP_010680.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1189810-1190823:+ | gene-YDR392W_CBS6412 | rna-NM_001180700.1_CBS6412 | cds-NP_010680.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1211665-1212678:+ | gene-YDR392W_CBS6413 | rna-NM_001180700.1_CBS6413 | cds-NP_010680.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1257360-1258373:+ | gene-YDR392W_CENPK1137D | rna-NM_001180700.1_CENPK1137D | cds-NP_010680.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1203242-1204255:+ | gene-YDR392W_EthanolRed | rna-NM_001180700.1_EthanolRed | cds-NP_010680.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1206552-1207565:+ | gene-YDR392W_FaliES1 | rna-NM_001180700.1_FaliES1 | cds-NP_010680.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000181.1:47971-48984:- | gene-YDR392W_JAY291 | rna-NM_001180700.1_JAY291 | cds-NP_010680.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1213284-1214297:+ | gene-YDR392W_MUCL30387 | rna-NM_001180700.1_MUCL30387 | cds-NP_010680.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1195395-1196408:+ | gene-YDR392W_MUCL30388 | rna-NM_001180700.1_MUCL30388 | cds-NP_010680.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1185085-1186098:+ | gene-YDR392W_MUCL39482 | rna-NM_001180700.1_MUCL39482 | cds-NP_010680.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1127524-1128537:+ | gene-YDR392W_MUCL42920 | rna-NM_001180700.1_MUCL42920 | cds-NP_010680.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1258619-1259632:+ | gene-YDR392W_NCIM3186 | rna-NM_001180700.1_NCIM3186 | cds-NP_010680.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1199057-1200070:+ | gene-YDR392W_NCYC1407 | rna-NM_001180700.1_NCYC1407 | cds-NP_010680.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1209185-1210198:+ | gene-YDR392W_PE2H3 | rna-NM_001180700.1_PE2H3 | cds-NP_010680.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1214758-1215771:+ | gene-YDR392W_PE2H4 | rna-NM_001180700.1_PE2H4 | cds-NP_010680.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1258696-1259709:+ | gene-YDR392W_S288C | rna-NM_001180700.1_S288C | cds-NP_010680.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000071.1:48083-49096:- | gene-YDR392W_SA1 | rna-NM_001180700.1_SA1 | cds-NP_010680.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1210814-1211827:+ | gene-YDR392W_ThermosaccDry | rna-NM_001180700.1_ThermosaccDry | cds-NP_010680.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1225997-1227010:+ | gene-YDR392W_VR1 | rna-NM_001180700.1_VR1 | cds-NP_010680.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:253624-254637:+ | gene-YDR392W_ZTW1 | rna-NM_001180700.1_ZTW1 | cds-NP_010680.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1205928-1206941:+ | gene-YDR392W_Sparadoxus | rna-NM_001180700.1_Sparadoxus | cds-NP_010680.1_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |