Gene name: SPT21
Reference locus (S288C): YMR179W
Gene biotype: protein_coding
Description: Protein with a role in transcriptional silencing; required for normal transcription at several loci including HTA2-HTB2 and HHF2-HHT2, but not required at the other histone loci; functionally related to Spt10p; localizes to nuclear foci that become diffuse upon DNA replication stress
Top 10 interactors (score): SPT10 (0.987); HIR2 (0.844); HTA1 (0.824); HTA2 (0.789); HTB1 (0.777); HTB2 (0.764); YTA7 (0.759); HIR3 (0.745); RLF2 (0.724); HHT1 (0.709); HIR1 (0.683); HHT2 (0.635); SWI4 (0.632); YGR017W (0.63); RTT106 (0.611); ASF1 (0.607); HHF1 (0.584); CAC2 (0.572); SRB2 (0.532); YLR257W (0.525)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:659777-662053:+ | gene-YMR179W_AKU4011 | rna-NM_001182685.1_AKU4011 | cds-NP_013904.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:11054-13330:- | gene-YMR179W_BG1 | rna-NM_001182685.1_BG1 | cds-NP_013904.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:604044-606320:+ | gene-YMR179W_Bruggeman | rna-NM_001182685.1_Bruggeman | cds-NP_013904.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:606775-609051:+ | gene-YMR179W_CAT1 | rna-NM_001182685.1_CAT1 | cds-NP_013904.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:592061-594337:+ | gene-YMR179W_CBS1585 | rna-NM_001182685.1_CBS1585 | cds-NP_013904.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:596313-598589:+ | gene-YMR179W_CBS436 | rna-NM_001182685.1_CBS436 | cds-NP_013904.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:704601-706877:+ | gene-YMR179W_CBS6412 | rna-NM_001182685.1_CBS6412 | cds-NP_013904.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:591203-593479:+ | gene-YMR179W_CBS6413 | rna-NM_001182685.1_CBS6413 | cds-NP_013904.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:614404-616680:+ | gene-YMR179W_CENPK1137D | rna-NM_001182685.1_CENPK1137D | cds-NP_013904.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:652434-654710:+ | gene-YMR179W_EthanolRed | rna-NM_001182685.1_EthanolRed | cds-NP_013904.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:597372-599648:+ | gene-YMR179W_FaliES1 | rna-NM_001182685.1_FaliES1 | cds-NP_013904.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000265.1:10879-13155:- | gene-YMR179W_JAY291 | rna-NM_001182685.1_JAY291 | cds-NP_013904.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:597590-599866:+ | gene-YMR179W_MUCL30387 | rna-NM_001182685.1_MUCL30387 | cds-NP_013904.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:604370-606646:+ | gene-YMR179W_MUCL30388 | rna-NM_001182685.1_MUCL30388 | cds-NP_013904.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:593113-595389:+ | gene-YMR179W_MUCL39482 | rna-NM_001182685.1_MUCL39482 | cds-NP_013904.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:600489-602765:+ | gene-YMR179W_MUCL42920 | rna-NM_001182685.1_MUCL42920 | cds-NP_013904.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:619812-622088:+ | gene-YMR179W_NCIM3186 | rna-NM_001182685.1_NCIM3186 | cds-NP_013904.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:592748-595024:+ | gene-YMR179W_NCYC1407 | rna-NM_001182685.1_NCYC1407 | cds-NP_013904.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:602652-604928:+ | gene-YMR179W_PE2H3 | rna-NM_001182685.1_PE2H3 | cds-NP_013904.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:603639-605915:+ | gene-YMR179W_PE2H4 | rna-NM_001182685.1_PE2H4 | cds-NP_013904.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:619858-622134:+ | gene-YMR179W_S288C | rna-NM_001182685.1_S288C | cds-NP_013904.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:185975-188251:- | gene-YMR179W_SA1 | rna-NM_001182685.1_SA1 | cds-NP_013904.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:594028-596304:+ | gene-YMR179W_ThermosaccDry | rna-NM_001182685.1_ThermosaccDry | cds-NP_013904.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:607204-609480:+ | gene-YMR179W_VR1 | rna-NM_001182685.1_VR1 | cds-NP_013904.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:9821-12097:+ | gene-YMR179W_ZTW1 | rna-NM_001182685.1_ZTW1 | cds-NP_013904.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:611991-614270:+ | gene-YMR179W_Sparadoxus | rna-NM_001182685.1_Sparadoxus | cds-NP_013904.1_Sparadoxus | 86.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |