Gene name: SPT20
Reference locus (S288C): YOL148C
Gene biotype: protein_coding
Description: Transcription factor SPT20; Subunit of the SAGA transcriptional regulatory complex; involved in maintaining the integrity of the complex; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay
Top 10 interactors (score): SGF73 (0.999); SPT8 (0.999); GCN5 (0.999); UBP8 (0.999); SGF29 (0.999); SPT3 (0.999); TAF9 (0.999); TAF12 (0.999); TAF5 (0.999); TAF6 (0.999); TRA1 (0.999); TAF10 (0.999); SGF11 (0.999); HFI1 (0.999); SPT7 (0.999); NGG1 (0.999); ADA2 (0.999); SUS1 (0.996); SPT15 (0.992); CHD1 (0.98)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:34417-36228:- | gene-YOL148C_AKU4011 | rna-NM_001183402.1_AKU4011 | cds-NP_014493.1_AKU4011 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:50-1858:- | gene-YOL148C_BG1 | rna-NM_001183402.1_BG1 | cds-NP_014493.1_BG1 | 98.9 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:35713-37524:- | gene-YOL148C_Bruggeman | rna-NM_001183402.1_Bruggeman | cds-NP_014493.1_Bruggeman | 99.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:34414-36222:- | gene-YOL148C_CAT1 | rna-NM_001183402.1_CAT1 | cds-NP_014493.1_CAT1 | 98.9 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:28884-30695:- | gene-YOL148C_CBS1585 | rna-NM_001183402.1_CBS1585 | cds-NP_014493.1_CBS1585 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:34738-36549:- | gene-YOL148C_CBS436 | rna-NM_001183402.1_CBS436 | cds-NP_014493.1_CBS436 | 99.3 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:28786-30597:- | gene-YOL148C_CBS6412 | rna-NM_001183402.1_CBS6412 | cds-NP_014493.1_CBS6412 | 99.6 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:35232-37043:- | gene-YOL148C_CBS6413 | rna-NM_001183402.1_CBS6413 | cds-NP_014493.1_CBS6413 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:45661-47472:- | gene-YOL148C_CENPK1137D | rna-NM_001183402.1_CENPK1137D | cds-NP_014493.1_CENPK1137D | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:32740-34503:- | gene-YOL148C_EthanolRed | rna-NM_001183402.1_EthanolRed | cds-NP_014493.1_EthanolRed | 95.3 | 97.1 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:34715-36526:- | gene-YOL148C_FaliES1 | rna-NM_001183402.1_FaliES1 | cds-NP_014493.1_FaliES1 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000329.1:46042-47850:+ | gene-YOL148C_JAY291 | rna-NM_001183402.1_JAY291 | cds-NP_014493.1_JAY291 | 98.9 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:40334-42145:- | gene-YOL148C_MUCL30387 | rna-NM_001183402.1_MUCL30387 | cds-NP_014493.1_MUCL30387 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:43344-45155:- | gene-YOL148C_MUCL30388 | rna-NM_001183402.1_MUCL30388 | cds-NP_014493.1_MUCL30388 | 99.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:36814-38625:- | gene-YOL148C_MUCL39482 | rna-NM_001183402.1_MUCL39482 | cds-NP_014493.1_MUCL39482 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:52739-54550:- | gene-YOL148C_MUCL42920 | rna-NM_001183402.1_MUCL42920 | cds-NP_014493.1_MUCL42920 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:45649-47463:- | gene-YOL148C_NCIM3186 | rna-NM_001183402.1_NCIM3186 | cds-NP_014493.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:42895-44706:- | gene-YOL148C_NCYC1407 | rna-NM_001183402.1_NCYC1407 | cds-NP_014493.1_NCYC1407 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:21289-23097:- | gene-YOL148C_PE2H3 | rna-NM_001183402.1_PE2H3 | cds-NP_014493.1_PE2H3 | 98.9 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:38237-40045:- | gene-YOL148C_PE2H4 | rna-NM_001183402.1_PE2H4 | cds-NP_014493.1_PE2H4 | 98.9 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:45760-47574:- | gene-YOL148C_S288C | rna-NM_001183402.1_S288C | cds-NP_014493.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:19146-20957:- | gene-YOL148C_SA1 | rna-NM_001183402.1_SA1 | cds-NP_014493.1_SA1 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:33858-35669:- | gene-YOL148C_ThermosaccDry | rna-NM_001183402.1_ThermosaccDry | cds-NP_014493.1_ThermosaccDry | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:34511-36319:- | gene-YOL148C_VR1 | rna-NM_001183402.1_VR1 | cds-NP_014493.1_VR1 | 98.9 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:33615-35426:- | gene-YOL148C_ZTW1 | rna-NM_001183402.1_ZTW1 | cds-NP_014493.1_ZTW1 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:36140-37951:- | gene-YOL148C_Sparadoxus | rna-NM_001183402.1_Sparadoxus | cds-NP_014493.1_Sparadoxus | 90.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |