Gene name: SPT2
Reference locus (S288C): YER161C
Gene biotype: protein_coding
Description: Protein involved in negative regulation of transcription; required for RNA polyadenylation; exhibits regulated interactions with both histones and SWI-SNF components; relocalizes to the cytosol in response to hypoxia; similar to mammalian HMG1 proteins
Top 10 interactors (score): SWI1 (0.947); LEO1 (0.935); RTF1 (0.837); SPT6 (0.834); CDC73 (0.817); CPA1 (0.809); HIR3 (0.802); HIR2 (0.799); ADH2 (0.78); DST1 (0.78); HIR1 (0.734); YOR302W (0.733); ELF1 (0.663); ASF1 (0.637); YHR177W (0.62); THO2 (0.614); MAK32 (0.597); AIM9 (0.573); SSA2 (0.571); BUR2 (0.568)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:480901-481902:- | gene-YER161C_AKU4011 | rna-NM_001179051.1_AKU4011 | cds-NP_011088.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:51471-52472:+ | gene-YER161C_BG1 | rna-NM_001179051.1_BG1 | cds-NP_011088.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:493610-494611:- | gene-YER161C_Bruggeman | rna-NM_001179051.1_Bruggeman | cds-NP_011088.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:480207-481208:- | gene-YER161C_CAT1 | rna-NM_001179051.1_CAT1 | cds-NP_011088.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:480710-481711:- | gene-YER161C_CBS1585 | rna-NM_001179051.1_CBS1585 | cds-NP_011088.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:490593-491594:- | gene-YER161C_CBS436 | rna-NM_001179051.1_CBS436 | cds-NP_011088.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:478686-479687:- | gene-YER161C_CBS6412 | rna-NM_001179051.1_CBS6412 | cds-NP_011088.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:487256-488257:- | gene-YER161C_CBS6413 | rna-NM_001179051.1_CBS6413 | cds-NP_011088.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:497119-498120:- | gene-YER161C_CENPK1137D | rna-NM_001179051.1_CENPK1137D | cds-NP_011088.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:486849-487850:- | gene-YER161C_EthanolRed | rna-NM_001179051.1_EthanolRed | cds-NP_011088.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:487785-488786:- | gene-YER161C_FaliES1 | rna-NM_001179051.1_FaliES1 | cds-NP_011088.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000169.1:51122-52123:+ | gene-YER161C_JAY291 | rna-NM_001179051.1_JAY291 | cds-NP_011088.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:480950-481951:- | gene-YER161C_MUCL30387 | rna-NM_001179051.1_MUCL30387 | cds-NP_011088.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:483858-484859:- | gene-YER161C_MUCL30388 | rna-NM_001179051.1_MUCL30388 | cds-NP_011088.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:476667-477668:- | gene-YER161C_MUCL39482 | rna-NM_001179051.1_MUCL39482 | cds-NP_011088.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:491173-492174:- | gene-YER161C_MUCL42920 | rna-NM_001179051.1_MUCL42920 | cds-NP_011088.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:499346-500347:- | gene-YER161C_NCIM3186 | rna-NM_001179051.1_NCIM3186 | cds-NP_011088.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:486124-487125:- | gene-YER161C_NCYC1407 | rna-NM_001179051.1_NCYC1407 | cds-NP_011088.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:502026-503027:- | gene-YER161C_PE2H3 | rna-NM_001179051.1_PE2H3 | cds-NP_011088.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:491967-492968:- | gene-YER161C_PE2H4 | rna-NM_001179051.1_PE2H4 | cds-NP_011088.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:499347-500348:- | gene-YER161C_S288C | rna-NM_001179051.1_S288C | cds-NP_011088.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000030.1:51512-52513:- | gene-YER161C_SA1 | rna-NM_001179051.1_SA1 | cds-NP_011088.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:488585-489586:- | gene-YER161C_ThermosaccDry | rna-NM_001179051.1_ThermosaccDry | cds-NP_011088.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:481872-482873:- | gene-YER161C_VR1 | rna-NM_001179051.1_VR1 | cds-NP_011088.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000011.1:1438-2439:- | gene-YER161C_ZTW1 | rna-NM_001179051.1_ZTW1 | cds-NP_011088.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:489796-490797:- | gene-YER161C_Sparadoxus | rna-NM_001179051.1_Sparadoxus | cds-NP_011088.1_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |