Gene name: SPT15
Reference locus (S288C): YER148W
Gene biotype: protein_coding
Description: TATA-binding protein (TBP); general transcription factor that interacts with other factors to form the preinitiation complex at promoters; essential for viability, highly conserved; yeast gene can complement mutations in human homolog TBP
Top 10 interactors (score): RPO21 (0.999); TAF9 (0.999); TAF5 (0.999); DST1 (0.999); TAF11 (0.999); TAF10 (0.999); TAF1 (0.999); MOT1 (0.999); TAF4 (0.999); TOA1 (0.999); BRF1 (0.999); TOA2 (0.999); SSL2 (0.999); SPT3 (0.999); TAF6 (0.999); TAF7 (0.999); TAF13 (0.999); SUA7 (0.999); TAF3 (0.999); TAF14 (0.999)
Homologues (species, bitscore): TBP (Homo sapiens, 315.8); Tbp (Mus musculus, 317.0); tbp (Danio rerio, 316.2); tbpl2 (Xenopus tropicalis, 312.8); Tbp (Drosophila melanogaster, 315.5); tbp-1 (Caenorhabditis elegans, 288.9); MRP15.10 (Arabidopsis thaliana, 318.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:452809-453531:+ | gene-YER148W_AKU4011 | rna-NM_001179038.3_AKU4011 | cds-NP_011075.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:91031-91753:- | gene-YER148W_BG1 | rna-NM_001179038.3_BG1 | cds-NP_011075.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:464097-464819:+ | gene-YER148W_Bruggeman | rna-NM_001179038.3_Bruggeman | cds-NP_011075.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:451947-452669:+ | gene-YER148W_CAT1 | rna-NM_001179038.3_CAT1 | cds-NP_011075.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:452626-453348:+ | gene-YER148W_CBS1585 | rna-NM_001179038.3_CBS1585 | cds-NP_011075.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:456432-457154:+ | gene-YER148W_CBS436 | rna-NM_001179038.3_CBS436 | cds-NP_011075.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:451139-451861:+ | gene-YER148W_CBS6412 | rna-NM_001179038.3_CBS6412 | cds-NP_011075.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:458685-459407:+ | gene-YER148W_CBS6413 | rna-NM_001179038.3_CBS6413 | cds-NP_011075.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:463076-463798:+ | gene-YER148W_CENPK1137D | rna-NM_001179038.3_CENPK1137D | cds-NP_011075.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:459098-459820:+ | gene-YER148W_EthanolRed | rna-NM_001179038.3_EthanolRed | cds-NP_011075.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:459684-460406:+ | gene-YER148W_FaliES1 | rna-NM_001179038.3_FaliES1 | cds-NP_011075.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000111.1:26083-26805:- | gene-YER148W_JAY291 | rna-NM_001179038.3_JAY291 | cds-NP_011075.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:452837-453559:+ | gene-YER148W_MUCL30387 | rna-NM_001179038.3_MUCL30387 | cds-NP_011075.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:455737-456459:+ | gene-YER148W_MUCL30388 | rna-NM_001179038.3_MUCL30388 | cds-NP_011075.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:448578-449300:+ | gene-YER148W_MUCL39482 | rna-NM_001179038.3_MUCL39482 | cds-NP_011075.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:460656-461378:+ | gene-YER148W_MUCL42920 | rna-NM_001179038.3_MUCL42920 | cds-NP_011075.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:465302-466024:+ | gene-YER148W_NCIM3186 | rna-NM_001179038.3_NCIM3186 | cds-NP_011075.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:458049-458771:+ | gene-YER148W_NCYC1407 | rna-NM_001179038.3_NCYC1407 | cds-NP_011075.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:473733-474455:+ | gene-YER148W_PE2H3 | rna-NM_001179038.3_PE2H3 | cds-NP_011075.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:463674-464396:+ | gene-YER148W_PE2H4 | rna-NM_001179038.3_PE2H4 | cds-NP_011075.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:465303-466025:+ | gene-YER148W_S288C | rna-NM_001179038.3_S288C | cds-NP_011075.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000030.1:23203-23925:+ | gene-YER148W_SA1 | rna-NM_001179038.3_SA1 | cds-NP_011075.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:460484-461206:+ | gene-YER148W_ThermosaccDry | rna-NM_001179038.3_ThermosaccDry | cds-NP_011075.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:453597-454319:+ | gene-YER148W_VR1 | rna-NM_001179038.3_VR1 | cds-NP_011075.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000010.1:15439-16161:+ | gene-YER148W_ZTW1 | rna-NM_001179038.3_ZTW1 | cds-NP_011075.3_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:461297-462019:+ | gene-YER148W_Sparadoxus | rna-NM_001179038.3_Sparadoxus | cds-NP_011075.3_Sparadoxus | 94.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |