Gene name: SPT10
Reference locus (S288C): YJL127C
Gene biotype: protein_coding
Description: Protein SPT10; Histone H3 acetylase with a role in transcriptional regulation; sequence-specific activator of histone genes, binds specifically and cooperatively to pairs of UAS elements in core histone promoters, functions at or near TATA box; involved in S phase-specific acetylation of H3K56 at histone promoters, which is required for recruitment of SWI/SNF nucleosome remodeling complex and subsequent transcription
Top 10 interactors (score): SPT21 (0.987); HHT1 (0.927); HTA1 (0.925); HTB1 (0.922); PUT3 (0.902); HIR2 (0.898); HHF1 (0.856); HIR3 (0.833); SPT6 (0.829); HTA2 (0.809); HTB2 (0.797); PUT2 (0.796); HHT2 (0.79); PUT1 (0.788); DAL80 (0.78); GCN5 (0.754); SPT15 (0.747); HPC2 (0.738); HIR1 (0.729); MIG1 (0.727)
Homologues (species, bitscore): gin1 (Xenopus tropicalis, 52.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:170617-172539:- | gene-YJL127C_AKU4011 | rna-NM_001181560.1_AKU4011 | cds-NP_012408.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:441203-443125:+ | gene-YJL127C_BG1 | rna-NM_001181560.1_BG1 | cds-NP_012408.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:182657-184579:- | gene-YJL127C_Bruggeman | rna-NM_001181560.1_Bruggeman | cds-NP_012408.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:186467-188389:- | gene-YJL127C_CAT1 | rna-NM_001181560.1_CAT1 | cds-NP_012408.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:176251-178173:- | gene-YJL127C_CBS1585 | rna-NM_001181560.1_CBS1585 | cds-NP_012408.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:200982-202904:- | gene-YJL127C_CBS436 | rna-NM_001181560.1_CBS436 | cds-NP_012408.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:172268-174190:- | gene-YJL127C_CBS6412 | rna-NM_001181560.1_CBS6412 | cds-NP_012408.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:173726-175648:- | gene-YJL127C_CBS6413 | rna-NM_001181560.1_CBS6413 | cds-NP_012408.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:164767-166689:- | gene-YJL127C_CENPK1137D | rna-NM_001181560.1_CENPK1137D | cds-NP_012408.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:174586-176508:- | gene-YJL127C_EthanolRed | rna-NM_001181560.1_EthanolRed | cds-NP_012408.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:180238-182160:- | gene-YJL127C_FaliES1 | rna-NM_001181560.1_FaliES1 | cds-NP_012408.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000099.1:61404-63326:- | gene-YJL127C_JAY291 | rna-NM_001181560.1_JAY291 | cds-NP_012408.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:184925-186847:- | gene-YJL127C_MUCL30387 | rna-NM_001181560.1_MUCL30387 | cds-NP_012408.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:181003-182925:- | gene-YJL127C_MUCL30388 | rna-NM_001181560.1_MUCL30388 | cds-NP_012408.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:175197-177119:- | gene-YJL127C_MUCL39482 | rna-NM_001181560.1_MUCL39482 | cds-NP_012408.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:180991-182913:- | gene-YJL127C_MUCL42920 | rna-NM_001181560.1_MUCL42920 | cds-NP_012408.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:182277-184199:- | gene-YJL127C_NCIM3186 | rna-NM_001181560.1_NCIM3186 | cds-NP_012408.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:173604-175526:- | gene-YJL127C_NCYC1407 | rna-NM_001181560.1_NCYC1407 | cds-NP_012408.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:186384-188306:- | gene-YJL127C_PE2H3 | rna-NM_001181560.1_PE2H3 | cds-NP_012408.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:186028-187950:- | gene-YJL127C_PE2H4 | rna-NM_001181560.1_PE2H4 | cds-NP_012408.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:182298-184220:- | gene-YJL127C_S288C | rna-NM_001181560.1_S288C | cds-NP_012408.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000085.1:14950-16872:+ | gene-YJL127C_SA1 | rna-NM_001181560.1_SA1 | cds-NP_012408.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:173429-175351:- | gene-YJL127C_ThermosaccDry | rna-NM_001181560.1_ThermosaccDry | cds-NP_012408.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:180501-182423:- | gene-YJL127C_VR1 | rna-NM_001181560.1_VR1 | cds-NP_012408.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:160709-162631:- | gene-YJL127C_ZTW1 | rna-NM_001181560.1_ZTW1 | cds-NP_012408.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:185910-187832:- | gene-YJL127C_Sparadoxus | rna-NM_001181560.1_Sparadoxus | cds-NP_012408.1_Sparadoxus | 88.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |