Gene name: SPR28
Reference locus (S288C): YDR218C
Gene biotype: protein_coding
Description: Sporulation-regulated protein 28; Sporulation-specific homolog of the CDC3/10/11/12 family of genes; meiotic septin expressed at high levels during meiotic divisions and ascospore formation; the yeast CDC3/10/11/12 family is a family of bud neck microfilament genes; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. Septin GTPase family
Top 10 interactors (score): CDC11 (0.971); SPR3 (0.956); CDC10 (0.953); CDC3 (0.929); CDC12 (0.927); YSW1 (0.921); SHS1 (0.919); BEM4 (0.8); GIP1 (0.762); DIT1 (0.665); BUD4 (0.619); SPO73 (0.617); PFS1 (0.595); SHC1 (0.566); SPO20 (0.564); DON1 (0.553); SKT5 (0.532); GIN4 (0.531); MPC54 (0.511); BNI4 (0.504)
Homologues (species, bitscore): SEPT1 (Homo sapiens, 167.5); Sept7 (Mus musculus, 163.3); sept5b (Danio rerio, 176.4); sept7 (Xenopus tropicalis, 167.5); pnut (Drosophila melanogaster, 170.6); unc-59 (Caenorhabditis elegans, 145.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:860481-861752:- | gene-YDR218C_AKU4011 | rna-NM_001180526.1_AKU4011 | cds-NP_010504.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:264081-265352:+ | gene-YDR218C_BG1 | rna-NM_001180526.1_BG1 | cds-NP_010504.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:892814-894074:- | gene-YDR218C_Bruggeman | rna-NM_001180526.1_Bruggeman | cds-NP_010504.1_Bruggeman | 98.6 | 99.1 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:880075-881346:- | gene-YDR218C_CAT1 | rna-NM_001180526.1_CAT1 | cds-NP_010504.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:850833-852104:- | gene-YDR218C_CBS1585 | rna-NM_001180526.1_CBS1585 | cds-NP_010504.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:879841-881112:- | gene-YDR218C_CBS436 | rna-NM_001180526.1_CBS436 | cds-NP_010504.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:847592-848863:- | gene-YDR218C_CBS6412 | rna-NM_001180526.1_CBS6412 | cds-NP_010504.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:878191-879462:- | gene-YDR218C_CBS6413 | rna-NM_001180526.1_CBS6413 | cds-NP_010504.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:902583-903854:- | gene-YDR218C_CENPK1137D | rna-NM_001180526.1_CENPK1137D | cds-NP_010504.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:861175-862446:- | gene-YDR218C_EthanolRed | rna-NM_001180526.1_EthanolRed | cds-NP_010504.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:869376-870647:- | gene-YDR218C_FaliES1 | rna-NM_001180526.1_FaliES1 | cds-NP_010504.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000348.1:40927-42198:+ | gene-YDR218C_JAY291 | rna-NM_001180526.1_JAY291 | cds-NP_010504.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:878465-879725:- | gene-YDR218C_MUCL30387 | rna-NM_001180526.1_MUCL30387 | cds-NP_010504.1_MUCL30387 | 98.6 | 99.1 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:866719-867979:- | gene-YDR218C_MUCL30388 | rna-NM_001180526.1_MUCL30388 | cds-NP_010504.1_MUCL30388 | 98.6 | 99.1 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:852242-853513:- | gene-YDR218C_MUCL39482 | rna-NM_001180526.1_MUCL39482 | cds-NP_010504.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:791523-792794:- | gene-YDR218C_MUCL42920 | rna-NM_001180526.1_MUCL42920 | cds-NP_010504.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:903704-904975:- | gene-YDR218C_NCIM3186 | rna-NM_001180526.1_NCIM3186 | cds-NP_010504.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:855907-857178:- | gene-YDR218C_NCYC1407 | rna-NM_001180526.1_NCYC1407 | cds-NP_010504.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:872132-873403:- | gene-YDR218C_PE2H3 | rna-NM_001180526.1_PE2H3 | cds-NP_010504.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:877414-878685:- | gene-YDR218C_PE2H4 | rna-NM_001180526.1_PE2H4 | cds-NP_010504.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:903781-905052:- | gene-YDR218C_S288C | rna-NM_001180526.1_S288C | cds-NP_010504.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:109888-111159:- | gene-YDR218C_SA1 | rna-NM_001180526.1_SA1 | cds-NP_010504.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:867532-868803:- | gene-YDR218C_ThermosaccDry | rna-NM_001180526.1_ThermosaccDry | cds-NP_010504.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:882737-884008:- | gene-YDR218C_VR1 | rna-NM_001180526.1_VR1 | cds-NP_010504.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:130249-131520:- | gene-YDR218C_ZTW1 | rna-NM_001180526.1_ZTW1 | cds-NP_010504.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:872702-873959:- | gene-YDR218C_Sparadoxus | rna-NM_001180526.1_Sparadoxus | cds-NP_010504.1_Sparadoxus | 86.7 | 98.8 | Verified | 1 | 1 | 0 | False | False | True | False | False |