Gene name: SPP41
Reference locus (S288C): YDR464W
Gene biotype: protein_coding
Description: Protein of unknown function; involved in negative regulation of expression of spliceosome components PRP4 and PRP3; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): PRP3 (0.826); REG1 (0.819); PRP4 (0.786); PRP11 (0.77); HSM3 (0.615); PUF4 (0.573); PDS5 (0.547); FHL1 (0.515); NUP60 (0.513)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1328784-1333091:+ | gene-YDR464W_AKU4011 | rna-NM_001180772.3_AKU4011 | cds-NP_010752.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:203899-208206:+ | gene-YDR464W_BG1 | rna-NM_001180772.3_BG1 | cds-NP_010752.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1360205-1364512:+ | gene-YDR464W_Bruggeman | rna-NM_001180772.3_Bruggeman | cds-NP_010752.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1337349-1341656:+ | gene-YDR464W_CAT1 | rna-NM_001180772.3_CAT1 | cds-NP_010752.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1323089-1327396:+ | gene-YDR464W_CBS1585 | rna-NM_001180772.3_CBS1585 | cds-NP_010752.3_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1342457-1346764:+ | gene-YDR464W_CBS436 | rna-NM_001180772.3_CBS436 | cds-NP_010752.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1318716-1323023:+ | gene-YDR464W_CBS6412 | rna-NM_001180772.3_CBS6412 | cds-NP_010752.3_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1341727-1346034:+ | gene-YDR464W_CBS6413 | rna-NM_001180772.3_CBS6413 | cds-NP_010752.3_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1387568-1391875:+ | gene-YDR464W_CENPK1137D | rna-NM_001180772.3_CENPK1137D | cds-NP_010752.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1332131-1336438:+ | gene-YDR464W_EthanolRed | rna-NM_001180772.3_EthanolRed | cds-NP_010752.3_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1335684-1339991:+ | gene-YDR464W_FaliES1 | rna-NM_001180772.3_FaliES1 | cds-NP_010752.3_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:33941-38248:+ | gene-YDR464W_JAY291 | rna-NM_001180772.3_JAY291 | cds-NP_010752.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1342697-1347004:+ | gene-YDR464W_MUCL30387 | rna-NM_001180772.3_MUCL30387 | cds-NP_010752.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1324719-1329026:+ | gene-YDR464W_MUCL30388 | rna-NM_001180772.3_MUCL30388 | cds-NP_010752.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1314573-1318880:+ | gene-YDR464W_MUCL39482 | rna-NM_001180772.3_MUCL39482 | cds-NP_010752.3_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1257373-1261680:+ | gene-YDR464W_MUCL42920 | rna-NM_001180772.3_MUCL42920 | cds-NP_010752.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1388795-1393102:+ | gene-YDR464W_NCIM3186 | rna-NM_001180772.3_NCIM3186 | cds-NP_010752.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1328346-1332653:+ | gene-YDR464W_NCYC1407 | rna-NM_001180772.3_NCYC1407 | cds-NP_010752.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1339192-1343499:+ | gene-YDR464W_PE2H3 | rna-NM_001180772.3_PE2H3 | cds-NP_010752.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1344765-1349072:+ | gene-YDR464W_PE2H4 | rna-NM_001180772.3_PE2H4 | cds-NP_010752.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1388872-1393179:+ | gene-YDR464W_S288C | rna-NM_001180772.3_S288C | cds-NP_010752.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:223981-228288:- | gene-YDR464W_SA1 | rna-NM_001180772.3_SA1 | cds-NP_010752.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1339906-1344213:+ | gene-YDR464W_ThermosaccDry | rna-NM_001180772.3_ThermosaccDry | cds-NP_010752.3_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1355635-1359942:+ | gene-YDR464W_VR1 | rna-NM_001180772.3_VR1 | cds-NP_010752.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:382578-386885:+ | gene-YDR464W_ZTW1 | rna-NM_001180772.3_ZTW1 | cds-NP_010752.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1342983-1347284:+ | gene-YDR464W_Sparadoxus | rna-NM_001180772.3_Sparadoxus | cds-NP_010752.3_Sparadoxus | 86.2 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |