Gene name: SPP382
Reference locus (S288C): YLR424W
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor SPP382; Essential protein that forms a dimer with Ntr2p; also forms a trimer, with Ntr2p and Prp43p, that is involved in spliceosome disassembly; found also in a multisubunit complex with the splicing factor Clf1p; suppressor of prp38-1 mutation
Top 10 interactors (score): PRP43 (0.999); NTR2 (0.999); CLF1 (0.999); CWC23 (0.998); SNU114 (0.998); LEA1 (0.998); CWC2 (0.997); PRP45 (0.997); CDC40 (0.997); SYF1 (0.996); PRP19 (0.995); BUD31 (0.993); SYF2 (0.991); YJU2 (0.988); PRP22 (0.988); PRP8 (0.979); BRR2 (0.979); SNP1 (0.972); ISY1 (0.971); PRP16 (0.97)
Homologues (species, bitscore): TFIP11 (Homo sapiens, 57.0); Tfip11 (Mus musculus, 53.1); tfip11 (Danio rerio, 56.2); tfip11 (Xenopus tropicalis, 55.5); sip1 (Drosophila melanogaster, 65.5); STIPL1 (Arabidopsis thaliana, 51.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:916944-919070:+ | gene-YLR424W_AKU4011 | rna-NM_001182312.1_AKU4011 | cds-NP_013528.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:149109-151235:+ | gene-YLR424W_BG1 | rna-NM_001182312.1_BG1 | cds-NP_013528.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:955247-957373:+ | gene-YLR424W_Bruggeman | rna-NM_001182312.1_Bruggeman | cds-NP_013528.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:950794-952920:+ | gene-YLR424W_CAT1 | rna-NM_001182312.1_CAT1 | cds-NP_013528.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:952541-954667:+ | gene-YLR424W_CBS1585 | rna-NM_001182312.1_CBS1585 | cds-NP_013528.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:936198-938324:+ | gene-YLR424W_CBS436 | rna-NM_001182312.1_CBS436 | cds-NP_013528.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:988581-990707:+ | gene-YLR424W_CBS6412 | rna-NM_001182312.1_CBS6412 | cds-NP_013528.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:952833-954959:+ | gene-YLR424W_CBS6413 | rna-NM_001182312.1_CBS6413 | cds-NP_013528.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:952595-954721:+ | gene-YLR424W_CENPK1137D | rna-NM_001182312.1_CENPK1137D | cds-NP_013528.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:909824-911950:+ | gene-YLR424W_EthanolRed | rna-NM_001182312.1_EthanolRed | cds-NP_013528.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:939305-941431:+ | gene-YLR424W_FaliES1 | rna-NM_001182312.1_FaliES1 | cds-NP_013528.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:91938-94064:+ | gene-YLR424W_JAY291 | rna-NM_001182312.1_JAY291 | cds-NP_013528.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:954109-956235:+ | gene-YLR424W_MUCL30387 | rna-NM_001182312.1_MUCL30387 | cds-NP_013528.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:960212-962338:+ | gene-YLR424W_MUCL30388 | rna-NM_001182312.1_MUCL30388 | cds-NP_013528.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:953761-955887:+ | gene-YLR424W_MUCL39482 | rna-NM_001182312.1_MUCL39482 | cds-NP_013528.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:948418-950544:+ | gene-YLR424W_MUCL42920 | rna-NM_001182312.1_MUCL42920 | cds-NP_013528.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:973369-975495:+ | gene-YLR424W_NCIM3186 | rna-NM_001182312.1_NCIM3186 | cds-NP_013528.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:962940-965066:+ | gene-YLR424W_NCYC1407 | rna-NM_001182312.1_NCYC1407 | cds-NP_013528.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:949319-951445:+ | gene-YLR424W_PE2H3 | rna-NM_001182312.1_PE2H3 | cds-NP_013528.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:949063-951189:+ | gene-YLR424W_PE2H4 | rna-NM_001182312.1_PE2H4 | cds-NP_013528.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:973395-975521:+ | gene-YLR424W_S288C | rna-NM_001182312.1_S288C | cds-NP_013528.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:79152-81278:- | gene-YLR424W_SA1 | rna-NM_001182312.1_SA1 | cds-NP_013528.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:942384-944510:+ | gene-YLR424W_ThermosaccDry | rna-NM_001182312.1_ThermosaccDry | cds-NP_013528.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:954761-956887:+ | gene-YLR424W_VR1 | rna-NM_001182312.1_VR1 | cds-NP_013528.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:278597-280723:+ | gene-YLR424W_ZTW1 | rna-NM_001182312.1_ZTW1 | cds-NP_013528.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:927841-929967:+ | gene-YLR424W_Sparadoxus | rna-NM_001182312.1_Sparadoxus | cds-NP_013528.1_Sparadoxus | 86.0 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |