Gene name: SPP381
Reference locus (S288C): YBR152W
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor SPP381; mRNA splicing factor, component of U4/U6.U5 tri-snRNP; interacts genetically and physically with Prp38p; relocalizes to the cytosol in response to hypoxia; Belongs to the SPP381 family
Top 10 interactors (score): BRR2 (0.999); SNU23 (0.999); SNU66 (0.999); PRP38 (0.999); SNU114 (0.998); PRP3 (0.998); SMB1 (0.998); PRP6 (0.998); PRP31 (0.997); DIB1 (0.996); PRP4 (0.995); LSM5 (0.992); SME1 (0.991); LSM7 (0.99); PRP8 (0.988); LSM2 (0.988); SNU13 (0.988); LSM6 (0.985); CUS1 (0.985); LSM3 (0.985)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:529260-530135:+ | gene-YBR152W_AKU4011 | rna-NM_001178500.3_AKU4011 | cds-NP_009710.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:519825-520700:+ | gene-YBR152W_BG1 | rna-NM_001178500.3_BG1 | cds-NP_009710.3_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:532297-533172:+ | gene-YBR152W_Bruggeman | rna-NM_001178500.3_Bruggeman | cds-NP_009710.3_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:426399-427274:+ | gene-YBR152W_CAT1 | rna-NM_001178500.3_CAT1 | cds-NP_009710.3_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:521039-521914:+ | gene-YBR152W_CBS1585 | rna-NM_001178500.3_CBS1585 | cds-NP_009710.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:529132-530007:+ | gene-YBR152W_CBS436 | rna-NM_001178500.3_CBS436 | cds-NP_009710.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:618905-619780:+ | gene-YBR152W_CBS6412 | rna-NM_001178500.3_CBS6412 | cds-NP_009710.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:526674-527549:+ | gene-YBR152W_CBS6413 | rna-NM_001178500.3_CBS6413 | cds-NP_009710.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:540144-541019:+ | gene-YBR152W_CENPK1137D | rna-NM_001178500.3_CENPK1137D | cds-NP_009710.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:655280-656155:+ | gene-YBR152W_EthanolRed | rna-NM_001178500.3_EthanolRed | cds-NP_009710.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:545292-546167:+ | gene-YBR152W_FaliES1 | rna-NM_001178500.3_FaliES1 | cds-NP_009710.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000322.1:13997-14872:- | gene-YBR152W_JAY291 | rna-NM_001178500.3_JAY291 | cds-NP_009710.3_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:533923-534798:+ | gene-YBR152W_MUCL30387 | rna-NM_001178500.3_MUCL30387 | cds-NP_009710.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:533217-534092:+ | gene-YBR152W_MUCL30388 | rna-NM_001178500.3_MUCL30388 | cds-NP_009710.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:519426-520301:+ | gene-YBR152W_MUCL39482 | rna-NM_001178500.3_MUCL39482 | cds-NP_009710.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:529318-530193:+ | gene-YBR152W_MUCL42920 | rna-NM_001178500.3_MUCL42920 | cds-NP_009710.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:546173-547048:+ | gene-YBR152W_NCIM3186 | rna-NM_001178500.3_NCIM3186 | cds-NP_009710.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:521976-522851:+ | gene-YBR152W_NCYC1407 | rna-NM_001178500.3_NCYC1407 | cds-NP_009710.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:534609-535484:+ | gene-YBR152W_PE2H3 | rna-NM_001178500.3_PE2H3 | cds-NP_009710.3_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:532285-533160:+ | gene-YBR152W_PE2H4 | rna-NM_001178500.3_PE2H4 | cds-NP_009710.3_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:546376-547251:+ | gene-YBR152W_S288C | rna-NM_001178500.3_S288C | cds-NP_009710.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000032.1:67554-68429:+ | gene-YBR152W_SA1 | rna-NM_001178500.3_SA1 | cds-NP_009710.3_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:544305-545180:+ | gene-YBR152W_ThermosaccDry | rna-NM_001178500.3_ThermosaccDry | cds-NP_009710.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:525800-526675:+ | gene-YBR152W_VR1 | rna-NM_001178500.3_VR1 | cds-NP_009710.3_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:519451-520326:+ | gene-YBR152W_ZTW1 | rna-NM_001178500.3_ZTW1 | cds-NP_009710.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |