Gene name: SPP2
Reference locus (S288C): YOR148C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor SPP2; Essential protein that promotes the first step of splicing; required for the final stages of spliceosome maturation and activation; interacts with Prp2p, which may release Spp2p from the spliceosome following the first cleavage reaction; stimulates Prp2p ATPase activity; Belongs to the SPP2 family
Top 10 interactors (score): CWC2 (0.999); PRP19 (0.999); SNT309 (0.963); PRP2 (0.949); NTR2 (0.82); CMG1 (0.767); HSH155 (0.711); YJU2 (0.709); IST3 (0.696); BUD13 (0.695); SLU7 (0.693); CWC15 (0.691); CWC25 (0.691); CWC27 (0.672); SME1 (0.658); SPP382 (0.654); SNU114 (0.642); NTC20 (0.632); CWC21 (0.63); PXR1 (0.62)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:606176-606734:- | gene-YOR148C_AKU4011 | rna-NM_001183567.1_AKU4011 | cds-NP_014791.1_AKU4011 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:8021-8579:- | gene-YOR148C_BG1 | rna-NM_001183567.1_BG1 | cds-NP_014791.1_BG1 | 98.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:590338-590896:- | gene-YOR148C_Bruggeman | rna-NM_001183567.1_Bruggeman | cds-NP_014791.1_Bruggeman | 98.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:590357-590915:- | gene-YOR148C_CAT1 | rna-NM_001183567.1_CAT1 | cds-NP_014791.1_CAT1 | 99.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:588651-589209:- | gene-YOR148C_CBS1585 | rna-NM_001183567.1_CBS1585 | cds-NP_014791.1_CBS1585 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:587060-587618:- | gene-YOR148C_CBS436 | rna-NM_001183567.1_CBS436 | cds-NP_014791.1_CBS436 | 98.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:586289-586847:- | gene-YOR148C_CBS6412 | rna-NM_001183567.1_CBS6412 | cds-NP_014791.1_CBS6412 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:595059-595617:- | gene-YOR148C_CBS6413 | rna-NM_001183567.1_CBS6413 | cds-NP_014791.1_CBS6413 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:608396-608953:- | gene-YOR148C_CENPK1137D | rna-NM_001183567.1_CENPK1137D | cds-NP_014791.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:582488-583046:- | gene-YOR148C_EthanolRed | rna-NM_001183567.1_EthanolRed | cds-NP_014791.1_EthanolRed | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:587341-587899:- | gene-YOR148C_FaliES1 | rna-NM_001183567.1_FaliES1 | cds-NP_014791.1_FaliES1 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000070.1:55651-56209:+ | gene-YOR148C_JAY291 | rna-NM_001183567.1_JAY291 | cds-NP_014791.1_JAY291 | 99.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:595145-595703:- | gene-YOR148C_MUCL30387 | rna-NM_001183567.1_MUCL30387 | cds-NP_014791.1_MUCL30387 | 98.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:601903-602461:- | gene-YOR148C_MUCL30388 | rna-NM_001183567.1_MUCL30388 | cds-NP_014791.1_MUCL30388 | 98.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:596573-597131:- | gene-YOR148C_MUCL39482 | rna-NM_001183567.1_MUCL39482 | cds-NP_014791.1_MUCL39482 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:606029-606587:- | gene-YOR148C_MUCL42920 | rna-NM_001183567.1_MUCL42920 | cds-NP_014791.1_MUCL42920 | 98.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:608529-609086:- | gene-YOR148C_NCIM3186 | rna-NM_001183567.1_NCIM3186 | cds-NP_014791.1_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:596696-597254:- | gene-YOR148C_NCYC1407 | rna-NM_001183567.1_NCYC1407 | cds-NP_014791.1_NCYC1407 | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:595202-595760:- | gene-YOR148C_PE2H3 | rna-NM_001183567.1_PE2H3 | cds-NP_014791.1_PE2H3 | 99.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:605579-606137:- | gene-YOR148C_PE2H4 | rna-NM_001183567.1_PE2H4 | cds-NP_014791.1_PE2H4 | 99.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:608640-609197:- | gene-YOR148C_S288C | rna-NM_001183567.1_S288C | cds-NP_014791.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:25188-25746:- | gene-YOR148C_SA1 | rna-NM_001183567.1_SA1 | cds-NP_014791.1_SA1 | 99.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:586524-587082:- | gene-YOR148C_ThermosaccDry | rna-NM_001183567.1_ThermosaccDry | cds-NP_014791.1_ThermosaccDry | 98.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:650202-650760:- | gene-YOR148C_VR1 | rna-NM_001183567.1_VR1 | cds-NP_014791.1_VR1 | 99.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:319971-320528:- | gene-YOR148C_ZTW1 | rna-NM_001183567.1_ZTW1 | cds-NP_014791.1_ZTW1 | 98.9 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:591643-592200:- | gene-YOR148C_Sparadoxus | rna-NM_001183567.1_Sparadoxus | cds-NP_014791.1_Sparadoxus | 85.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |