Gene name: SPO16
Reference locus (S288C): YHR153C
Gene biotype: protein_coding
Description: Sporulation-specific protein 16; Meiosis-specific protein involved in synaptonemal complex assembly; implicated in regulation of crossover formation; required for sporulation
Top 10 interactors (score): ZIP2 (0.995); SPO22 (0.99); MSH4 (0.954); HFM1 (0.943); MSH5 (0.919); CST9 (0.893); ZIP1 (0.89); RED1 (0.882); ECM11 (0.814); GMC2 (0.813); SPO11 (0.78); MUS81 (0.765); MLH2 (0.747); SPO74 (0.746); MLH3 (0.745); MLH1 (0.716); YEN1 (0.713); DON1 (0.697); YMR114C (0.697); PCH2 (0.695)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:389177-389773:- | gene-YHR153C_AKU4011 | rna-NM_001179284.1_AKU4011 | cds-NP_012023.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:127964-128560:+ | gene-YHR153C_BG1 | rna-NM_001179284.1_BG1 | cds-NP_012023.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:396417-397013:- | gene-YHR153C_Bruggeman | rna-NM_001179284.1_Bruggeman | cds-NP_012023.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:391830-392426:- | gene-YHR153C_CAT1 | rna-NM_001179284.1_CAT1 | cds-NP_012023.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:388634-389230:- | gene-YHR153C_CBS1585 | rna-NM_001179284.1_CBS1585 | cds-NP_012023.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:386084-386680:- | gene-YHR153C_CBS436 | rna-NM_001179284.1_CBS436 | cds-NP_012023.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:389074-389670:- | gene-YHR153C_CBS6412 | rna-NM_001179284.1_CBS6412 | cds-NP_012023.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:389514-390110:- | gene-YHR153C_CBS6413 | rna-NM_001179284.1_CBS6413 | cds-NP_012023.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:395258-395854:- | gene-YHR153C_CENPK1137D | rna-NM_001179284.1_CENPK1137D | cds-NP_012023.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:447715-448311:- | gene-YHR153C_EthanolRed | rna-NM_001179284.1_EthanolRed | cds-NP_012023.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:390158-390754:- | gene-YHR153C_FaliES1 | rna-NM_001179284.1_FaliES1 | cds-NP_012023.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:49078-49674:+ | gene-YHR153C_JAY291 | rna-NM_001179284.1_JAY291 | cds-NP_012023.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:397498-398094:- | gene-YHR153C_MUCL30387 | rna-NM_001179284.1_MUCL30387 | cds-NP_012023.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:396939-397535:- | gene-YHR153C_MUCL30388 | rna-NM_001179284.1_MUCL30388 | cds-NP_012023.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:388545-389141:- | gene-YHR153C_MUCL39482 | rna-NM_001179284.1_MUCL39482 | cds-NP_012023.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:395102-395698:- | gene-YHR153C_MUCL42920 | rna-NM_001179284.1_MUCL42920 | cds-NP_012023.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:401968-402564:- | gene-YHR153C_NCIM3186 | rna-NM_001179284.1_NCIM3186 | cds-NP_012023.1_NCIM3186 | 87.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:391003-391599:- | gene-YHR153C_NCYC1407 | rna-NM_001179284.1_NCYC1407 | cds-NP_012023.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:390142-390738:- | gene-YHR153C_PE2H3 | rna-NM_001179284.1_PE2H3 | cds-NP_012023.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:397569-398165:- | gene-YHR153C_PE2H4 | rna-NM_001179284.1_PE2H4 | cds-NP_012023.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:402086-402682:- | gene-YHR153C_S288C | rna-NM_001179284.1_S288C | cds-NP_012023.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:49135-49731:+ | gene-YHR153C_SA1 | rna-NM_001179284.1_SA1 | cds-NP_012023.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:391241-391837:- | gene-YHR153C_ThermosaccDry | rna-NM_001179284.1_ThermosaccDry | cds-NP_012023.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:399064-399660:- | gene-YHR153C_VR1 | rna-NM_001179284.1_VR1 | cds-NP_012023.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:381480-382077:- | gene-YHR153C_ZTW1 | rna-NM_001179284.1_ZTW1 | cds-NP_012023.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:387645-388244:- | gene-YHR153C_Sparadoxus | rna-NM_001179284.1_Sparadoxus | cds-NP_012023.1_Sparadoxus | 85.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |