Gene name: SPG3
Reference locus (S288C): YDR504C
Gene biotype: protein_coding
Description: Stationary phase protein 3; Protein required for high temperature survival during stationary phase; not required for growth on nonfermentable carbon sources; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum
Top 10 interactors (score): SPG5 (0.813); SSA3 (0.595); ROX1 (0.571); DAN4 (0.485); LIA1 (0.485)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1396296-1396679:- | gene-YDR504C_AKU4011 | rna-NM_001180812.1_AKU4011 | cds-NP_010792.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000073.1:37854-38273:- | gene-YDR504C_BG1 | rna-NM_001180812.1_BG1 | cds-NP_010792.1_BG1 | 90.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1427617-1428000:- | gene-YDR504C_Bruggeman | rna-NM_001180812.1_Bruggeman | cds-NP_010792.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1404796-1405179:- | gene-YDR504C_CAT1 | rna-NM_001180812.1_CAT1 | cds-NP_010792.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1390538-1390921:- | gene-YDR504C_CBS1585 | rna-NM_001180812.1_CBS1585 | cds-NP_010792.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1409893-1410282:- | gene-YDR504C_CBS436 | rna-NM_001180812.1_CBS436 | cds-NP_010792.1_CBS436 | 98.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1386180-1386563:- | gene-YDR504C_CBS6412 | rna-NM_001180812.1_CBS6412 | cds-NP_010792.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1409195-1409578:- | gene-YDR504C_CBS6413 | rna-NM_001180812.1_CBS6413 | cds-NP_010792.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1455005-1455388:- | gene-YDR504C_CENPK1137D | rna-NM_001180812.1_CENPK1137D | cds-NP_010792.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1399585-1399968:- | gene-YDR504C_EthanolRed | rna-NM_001180812.1_EthanolRed | cds-NP_010792.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1403138-1403521:- | gene-YDR504C_FaliES1 | rna-NM_001180812.1_FaliES1 | cds-NP_010792.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:101388-101807:- | gene-YDR504C_JAY291 | rna-NM_001180812.1_JAY291 | cds-NP_010792.1_JAY291 | 90.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1410142-1410525:- | gene-YDR504C_MUCL30387 | rna-NM_001180812.1_MUCL30387 | cds-NP_010792.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1392135-1392518:- | gene-YDR504C_MUCL30388 | rna-NM_001180812.1_MUCL30388 | cds-NP_010792.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1382023-1382406:- | gene-YDR504C_MUCL39482 | rna-NM_001180812.1_MUCL39482 | cds-NP_010792.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1324815-1325204:- | gene-YDR504C_MUCL42920 | rna-NM_001180812.1_MUCL42920 | cds-NP_010792.1_MUCL42920 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1456234-1456617:- | gene-YDR504C_NCIM3186 | rna-NM_001180812.1_NCIM3186 | cds-NP_010792.1_NCIM3186 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1395809-1396192:- | gene-YDR504C_NCYC1407 | rna-NM_001180812.1_NCYC1407 | cds-NP_010792.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1406655-1407074:- | gene-YDR504C_PE2H3 | rna-NM_001180812.1_PE2H3 | cds-NP_010792.1_PE2H3 | 90.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1412232-1412615:- | gene-YDR504C_PE2H4 | rna-NM_001180812.1_PE2H4 | cds-NP_010792.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1456311-1456694:- | gene-YDR504C_S288C | rna-NM_001180812.1_S288C | cds-NP_010792.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:160439-160822:+ | gene-YDR504C_SA1 | rna-NM_001180812.1_SA1 | cds-NP_010792.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1407360-1407743:- | gene-YDR504C_ThermosaccDry | rna-NM_001180812.1_ThermosaccDry | cds-NP_010792.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1423101-1423520:- | gene-YDR504C_VR1 | rna-NM_001180812.1_VR1 | cds-NP_010792.1_VR1 | 90.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:450028-450411:- | gene-YDR504C_ZTW1 | rna-NM_001180812.1_ZTW1 | cds-NP_010792.1_ZTW1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1410249-1410619:- | gene-YDR504C_Sparadoxus | rna-NM_001180812.1_Sparadoxus | cds-NP_010792.1_Sparadoxus | 82.4 | 95.5 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |