Gene name: SPE3
Reference locus (S288C): YPR069C
Gene biotype: protein_coding
Description: Spermidine synthase; involved in biosynthesis of spermidine and also in biosynthesis of pantothenic acid; spermidine is required for growth of wild-type cells
Top 10 interactors (score): SPE1 (0.999); SPE2 (0.998); MEU1 (0.987); SPE4 (0.987); FMS1 (0.98); CAR1 (0.937); LYS9 (0.875); ARG1 (0.786); HYP2 (0.772); ANB1 (0.736); CAR2 (0.734); DYS1 (0.731); ERP5 (0.727); ARG5,6 (0.712); NIT3 (0.695); RRP6 (0.693); ARG4 (0.679); LIA1 (0.679); GCV1 (0.667); RPS20 (0.654)
Homologues (species, bitscore): SRM (Homo sapiens, 376.3); Srm (Mus musculus, 367.9); srm (Danio rerio, 370.9); srm (Xenopus tropicalis, 377.5); SpdS (Drosophila melanogaster, 298.1); spds-1 (Caenorhabditis elegans, 314.7); SPDS1 (Arabidopsis thaliana, 312.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:656234-657115:- | gene-YPR069C_AKU4011 | rna-NM_001184166.1_AKU4011 | cds-NP_015394.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:240576-241457:+ | gene-YPR069C_BG1 | rna-NM_001184166.1_BG1 | cds-NP_015394.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:733901-734782:- | gene-YPR069C_Bruggeman | rna-NM_001184166.1_Bruggeman | cds-NP_015394.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:777345-778226:- | gene-YPR069C_CAT1 | rna-NM_001184166.1_CAT1 | cds-NP_015394.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:659922-660803:- | gene-YPR069C_CBS1585 | rna-NM_001184166.1_CBS1585 | cds-NP_015394.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:674287-675168:- | gene-YPR069C_CBS436 | rna-NM_001184166.1_CBS436 | cds-NP_015394.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:663669-664550:- | gene-YPR069C_CBS6412 | rna-NM_001184166.1_CBS6412 | cds-NP_015394.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:656868-657749:- | gene-YPR069C_CBS6413 | rna-NM_001184166.1_CBS6413 | cds-NP_015394.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:684519-685400:- | gene-YPR069C_CENPK1137D | rna-NM_001184166.1_CENPK1137D | cds-NP_015394.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:983428-984309:- | gene-YPR069C_EthanolRed | rna-NM_001184166.1_EthanolRed | cds-NP_015394.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:662065-662946:- | gene-YPR069C_FaliES1 | rna-NM_001184166.1_FaliES1 | cds-NP_015394.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000446.1:34007-34888:- | gene-YPR069C_JAY291 | rna-NM_001184166.1_JAY291 | cds-NP_015394.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:675161-676042:- | gene-YPR069C_MUCL30387 | rna-NM_001184166.1_MUCL30387 | cds-NP_015394.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:673866-674747:- | gene-YPR069C_MUCL30388 | rna-NM_001184166.1_MUCL30388 | cds-NP_015394.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:653179-654060:- | gene-YPR069C_MUCL39482 | rna-NM_001184166.1_MUCL39482 | cds-NP_015394.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:716002-716883:- | gene-YPR069C_MUCL42920 | rna-NM_001184166.1_MUCL42920 | cds-NP_015394.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:684539-685420:- | gene-YPR069C_NCIM3186 | rna-NM_001184166.1_NCIM3186 | cds-NP_015394.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:661107-661988:- | gene-YPR069C_NCYC1407 | rna-NM_001184166.1_NCYC1407 | cds-NP_015394.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:667310-668191:- | gene-YPR069C_PE2H3 | rna-NM_001184166.1_PE2H3 | cds-NP_015394.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:666958-667839:- | gene-YPR069C_PE2H4 | rna-NM_001184166.1_PE2H4 | cds-NP_015394.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:684556-685437:- | gene-YPR069C_S288C | rna-NM_001184166.1_S288C | cds-NP_015394.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:15253-16134:+ | gene-YPR069C_SA1 | rna-NM_001184166.1_SA1 | cds-NP_015394.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:661840-662721:- | gene-YPR069C_ThermosaccDry | rna-NM_001184166.1_ThermosaccDry | cds-NP_015394.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:677984-678865:- | gene-YPR069C_VR1 | rna-NM_001184166.1_VR1 | cds-NP_015394.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:661063-661944:- | gene-YPR069C_ZTW1 | rna-NM_001184166.1_ZTW1 | cds-NP_015394.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:661820-662701:- | gene-YPR069C_Sparadoxus | rna-NM_001184166.1_Sparadoxus | cds-NP_015394.1_Sparadoxus | 92.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |