Gene name: SPC97
Reference locus (S288C): YHR172W
Gene biotype: protein_coding
Description: Spindle pole body component SPC97; Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque
Top 10 interactors (score): SPC98 (0.999); TUB4 (0.999); SPC110 (0.995); SPC72 (0.995); MPS1 (0.971); CDC31 (0.952); TUB2 (0.949); STU2 (0.947); TUB1 (0.945); CIN8 (0.94); SPC42 (0.939); KIP1 (0.925); KAR3 (0.902); BIM1 (0.9); SMC3 (0.9); CMD1 (0.898); CDC5 (0.897); IRR1 (0.897); POL2 (0.897); SMC1 (0.896)
Homologues (species, bitscore): TUBGCP2 (Homo sapiens, 88.2); Tubgcp2 (Mus musculus, 89.4); tubgcp2 (Danio rerio, 86.7); tubgcp2 (Xenopus tropicalis, 96.7); AT5G17410 (Arabidopsis thaliana, 87.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:435432-437903:+ | gene-YHR172W_AKU4011 | rna-NM_001179303.1_AKU4011 | cds-NP_012042.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:79838-82309:- | gene-YHR172W_BG1 | rna-NM_001179303.1_BG1 | cds-NP_012042.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:442673-445144:+ | gene-YHR172W_Bruggeman | rna-NM_001179303.1_Bruggeman | cds-NP_012042.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:438075-440546:+ | gene-YHR172W_CAT1 | rna-NM_001179303.1_CAT1 | cds-NP_012042.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:434886-437357:+ | gene-YHR172W_CBS1585 | rna-NM_001179303.1_CBS1585 | cds-NP_012042.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:432327-434798:+ | gene-YHR172W_CBS436 | rna-NM_001179303.1_CBS436 | cds-NP_012042.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:435344-437815:+ | gene-YHR172W_CBS6412 | rna-NM_001179303.1_CBS6412 | cds-NP_012042.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:435771-438242:+ | gene-YHR172W_CBS6413 | rna-NM_001179303.1_CBS6413 | cds-NP_012042.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:441506-443977:+ | gene-YHR172W_CENPK1137D | rna-NM_001179303.1_CENPK1137D | cds-NP_012042.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:493981-496452:+ | gene-YHR172W_EthanolRed | rna-NM_001179303.1_EthanolRed | cds-NP_012042.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:436424-438895:+ | gene-YHR172W_FaliES1 | rna-NM_001179303.1_FaliES1 | cds-NP_012042.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:950-3421:- | gene-YHR172W_JAY291 | rna-NM_001179303.1_JAY291 | cds-NP_012042.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:443746-446217:+ | gene-YHR172W_MUCL30387 | rna-NM_001179303.1_MUCL30387 | cds-NP_012042.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:443185-445656:+ | gene-YHR172W_MUCL30388 | rna-NM_001179303.1_MUCL30388 | cds-NP_012042.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:434797-437268:+ | gene-YHR172W_MUCL39482 | rna-NM_001179303.1_MUCL39482 | cds-NP_012042.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:441404-443875:+ | gene-YHR172W_MUCL42920 | rna-NM_001179303.1_MUCL42920 | cds-NP_012042.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:448217-450688:+ | gene-YHR172W_NCIM3186 | rna-NM_001179303.1_NCIM3186 | cds-NP_012042.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:437256-439727:+ | gene-YHR172W_NCYC1407 | rna-NM_001179303.1_NCYC1407 | cds-NP_012042.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:436396-438867:+ | gene-YHR172W_PE2H3 | rna-NM_001179303.1_PE2H3 | cds-NP_012042.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:443823-446294:+ | gene-YHR172W_PE2H4 | rna-NM_001179303.1_PE2H4 | cds-NP_012042.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:448335-450806:+ | gene-YHR172W_S288C | rna-NM_001179303.1_S288C | cds-NP_012042.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:1010-3481:- | gene-YHR172W_SA1 | rna-NM_001179303.1_SA1 | cds-NP_012042.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:437507-439978:+ | gene-YHR172W_ThermosaccDry | rna-NM_001179303.1_ThermosaccDry | cds-NP_012042.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:445322-447793:+ | gene-YHR172W_VR1 | rna-NM_001179303.1_VR1 | cds-NP_012042.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:427748-430219:+ | gene-YHR172W_ZTW1 | rna-NM_001179303.1_ZTW1 | cds-NP_012042.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:433882-436353:+ | gene-YHR172W_Sparadoxus | rna-NM_001179303.1_Sparadoxus | cds-NP_012042.1_Sparadoxus | 90.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |