Gene name: SPC72
Reference locus (S288C): YAL047C
Gene biotype: protein_coding
Description: Spindle pole component SPC72; Gamma-tubulin small complex (gamma-TuSC) receptor; recruits the gamma-TuSC complex to the cytoplasmic side of the SPB, connecting nuclear microtubules to the SPB; involved in astral microtubule formation, stabilization, and with Stu2p, anchoring astral MTs at the cytoplasmic face of the SPB, and regulating plus-end MT dynamics; regulated by Cdc5 kinase
Top 10 interactors (score): TUB4 (0.995); SPC97 (0.995); SPC98 (0.98); CNM67 (0.978); STU2 (0.974); KAR1 (0.966); SPC110 (0.965); BFA1 (0.94); SPC42 (0.924); KIN4 (0.924); CDC5 (0.92); SPC29 (0.89); NUD1 (0.89); BUB2 (0.889); KAR9 (0.856); KAR3 (0.846); CDC31 (0.844); SFI1 (0.836); BBP1 (0.793); NBP1 (0.788)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:40134-42002:- | gene-YAL047C_AKU4011 | rna-NM_001178192.2_AKU4011 | cds-NP_009352.2_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:27202-29070:- | gene-YAL047C_BG1 | rna-NM_001178192.2_BG1 | cds-NP_009352.2_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:54591-56459:- | gene-YAL047C_Bruggeman | rna-NM_001178192.2_Bruggeman | cds-NP_009352.2_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:41352-43220:- | gene-YAL047C_CAT1 | rna-NM_001178192.2_CAT1 | cds-NP_009352.2_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:53155-55023:- | gene-YAL047C_CBS1585 | rna-NM_001178192.2_CBS1585 | cds-NP_009352.2_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:53397-55265:- | gene-YAL047C_CBS436 | rna-NM_001178192.2_CBS436 | cds-NP_009352.2_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005327.1:39300-41168:- | gene-YAL047C_CBS6412 | rna-NM_001178192.2_CBS6412 | cds-NP_009352.2_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:51418-53286:- | gene-YAL047C_CBS6413 | rna-NM_001178192.2_CBS6413 | cds-NP_009352.2_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:55045-56913:- | gene-YAL047C_CENPK1137D | rna-NM_001178192.2_CENPK1137D | cds-NP_009352.2_CENPK1137D | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:41548-43416:- | gene-YAL047C_EthanolRed | rna-NM_001178192.2_EthanolRed | cds-NP_009352.2_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:55490-57358:- | gene-YAL047C_FaliES1 | rna-NM_001178192.2_FaliES1 | cds-NP_009352.2_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:27441-29309:- | gene-YAL047C_JAY291 | rna-NM_001178192.2_JAY291 | cds-NP_009352.2_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:56096-57964:- | gene-YAL047C_MUCL30387 | rna-NM_001178192.2_MUCL30387 | cds-NP_009352.2_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:52642-54510:- | gene-YAL047C_MUCL30388 | rna-NM_001178192.2_MUCL30388 | cds-NP_009352.2_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:51959-53827:- | gene-YAL047C_MUCL39482 | rna-NM_001178192.2_MUCL39482 | cds-NP_009352.2_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:54301-56169:- | gene-YAL047C_MUCL42920 | rna-NM_001178192.2_MUCL42920 | cds-NP_009352.2_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:54866-56734:- | gene-YAL047C_NCIM3186 | rna-NM_001178192.2_NCIM3186 | cds-NP_009352.2_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:39824-41692:- | gene-YAL047C_NCYC1407 | rna-NM_001178192.2_NCYC1407 | cds-NP_009352.2_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:41705-43573:- | gene-YAL047C_PE2H3 | rna-NM_001178192.2_PE2H3 | cds-NP_009352.2_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:41424-43292:- | gene-YAL047C_PE2H4 | rna-NM_001178192.2_PE2H4 | cds-NP_009352.2_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:54989-56857:- | gene-YAL047C_S288C | rna-NM_001178192.2_S288C | cds-NP_009352.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000084.1:29598-31466:- | gene-YAL047C_SA1 | rna-NM_001178192.2_SA1 | cds-NP_009352.2_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:55700-57568:- | gene-YAL047C_ThermosaccDry | rna-NM_001178192.2_ThermosaccDry | cds-NP_009352.2_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:56964-58832:- | gene-YAL047C_VR1 | rna-NM_001178192.2_VR1 | cds-NP_009352.2_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:27509-29377:- | gene-YAL047C_ZTW1 | rna-NM_001178192.2_ZTW1 | cds-NP_009352.2_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:45203-47071:- | gene-YAL047C_Sparadoxus | rna-NM_001178192.2_Sparadoxus | cds-NP_009352.2_Sparadoxus | 88.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |