Gene name: SPC42
Reference locus (S288C): YKL042W
Gene biotype: protein_coding
Description: Central plaque component of spindle pole body (SPB); involved in SPB duplication, may facilitate attachment of the SPB to the nuclear membrane; Belongs to the SPC42 family
Top 10 interactors (score): SPC110 (0.997); SPC29 (0.993); CNM67 (0.987); SPC97 (0.939); SPC98 (0.938); SPC72 (0.924); MPS1 (0.914); CMD1 (0.911); BBP1 (0.902); MPS3 (0.898); KAR1 (0.895); NBP1 (0.888); CLB5 (0.876); CDC31 (0.873); SFI1 (0.866); MPS2 (0.859); BUB2 (0.838); STU2 (0.838); CDC28 (0.832); CDC14 (0.83)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:344486-345577:+ | gene-YKL042W_AKU4011 | rna-NM_001179608.3_AKU4011 | cds-NP_012882.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:298409-299500:- | gene-YKL042W_BG1 | rna-NM_001179608.3_BG1 | cds-NP_012882.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:363751-364842:+ | gene-YKL042W_Bruggeman | rna-NM_001179608.3_Bruggeman | cds-NP_012882.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:359935-361026:+ | gene-YKL042W_CAT1 | rna-NM_001179608.3_CAT1 | cds-NP_012882.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:357213-358304:+ | gene-YKL042W_CBS1585 | rna-NM_001179608.3_CBS1585 | cds-NP_012882.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:355337-356428:+ | gene-YKL042W_CBS436 | rna-NM_001179608.3_CBS436 | cds-NP_012882.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:341350-342441:+ | gene-YKL042W_CBS6412 | rna-NM_001179608.3_CBS6412 | cds-NP_012882.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:357178-358269:+ | gene-YKL042W_CBS6413 | rna-NM_001179608.3_CBS6413 | cds-NP_012882.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:358133-359224:+ | gene-YKL042W_CENPK1137D | rna-NM_001179608.3_CENPK1137D | cds-NP_012882.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:355168-356259:+ | gene-YKL042W_EthanolRed | rna-NM_001179608.3_EthanolRed | cds-NP_012882.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:355987-357078:+ | gene-YKL042W_FaliES1 | rna-NM_001179608.3_FaliES1 | cds-NP_012882.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000080.1:60899-61990:+ | gene-YKL042W_JAY291 | rna-NM_001179608.3_JAY291 | cds-NP_012882.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:364651-365742:+ | gene-YKL042W_MUCL30387 | rna-NM_001179608.3_MUCL30387 | cds-NP_012882.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:359541-360632:+ | gene-YKL042W_MUCL30388 | rna-NM_001179608.3_MUCL30388 | cds-NP_012882.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:356509-357600:+ | gene-YKL042W_MUCL39482 | rna-NM_001179608.3_MUCL39482 | cds-NP_012882.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:361368-362459:+ | gene-YKL042W_MUCL42920 | rna-NM_001179608.3_MUCL42920 | cds-NP_012882.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:358464-359555:+ | gene-YKL042W_NCIM3186 | rna-NM_001179608.3_NCIM3186 | cds-NP_012882.3_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:356708-357799:+ | gene-YKL042W_NCYC1407 | rna-NM_001179608.3_NCYC1407 | cds-NP_012882.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:381245-382336:+ | gene-YKL042W_PE2H3 | rna-NM_001179608.3_PE2H3 | cds-NP_012882.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:365980-367071:+ | gene-YKL042W_PE2H4 | rna-NM_001179608.3_PE2H4 | cds-NP_012882.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:358475-359566:+ | gene-YKL042W_S288C | rna-NM_001179608.3_S288C | cds-NP_012882.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:36586-37677:+ | gene-YKL042W_SA1 | rna-NM_001179608.3_SA1 | cds-NP_012882.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:357174-358265:+ | gene-YKL042W_ThermosaccDry | rna-NM_001179608.3_ThermosaccDry | cds-NP_012882.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:356316-357407:+ | gene-YKL042W_VR1 | rna-NM_001179608.3_VR1 | cds-NP_012882.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:355187-356278:+ | gene-YKL042W_ZTW1 | rna-NM_001179608.3_ZTW1 | cds-NP_012882.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:374440-375531:+ | gene-YKL042W_Sparadoxus | rna-NM_001179608.3_Sparadoxus | cds-NP_012882.3_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |