Gene name: SPC25
Reference locus (S288C): YER018C
Gene biotype: protein_coding
Description: Kinetochore protein SPC25; Component of the kinetochore-associated Ndc80 complex; involved in chromosome segregation, spindle checkpoint activity, and kinetochore clustering; evolutionarily conserved; other members include Ndc80p, Nuf2p, Spc24p, and Spc25p
Top 10 interactors (score): SPC24 (0.999); NUF2 (0.999); NDC80 (0.999); DSN1 (0.995); MTW1 (0.986); SPC105 (0.977); CNN1 (0.975); MAD2 (0.974); NSL1 (0.961); IPL1 (0.948); BUB1 (0.934); MPS1 (0.928); KAR3 (0.922); KIP1 (0.914); MAD3 (0.913); ASE1 (0.907); UBC11 (0.905); YCG1 (0.904); SMC2 (0.899); CDC45 (0.896)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:185993-186658:- | gene-YER018C_AKU4011 | rna-NM_001178909.3_AKU4011 | cds-NP_010934.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:239433-240098:+ | gene-YER018C_BG1 | rna-NM_001178909.3_BG1 | cds-NP_010934.3_BG1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:193850-194515:- | gene-YER018C_Bruggeman | rna-NM_001178909.3_Bruggeman | cds-NP_010934.3_Bruggeman | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:188740-189405:- | gene-YER018C_CAT1 | rna-NM_001178909.3_CAT1 | cds-NP_010934.3_CAT1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:185916-186581:- | gene-YER018C_CBS1585 | rna-NM_001178909.3_CBS1585 | cds-NP_010934.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:187502-188167:- | gene-YER018C_CBS436 | rna-NM_001178909.3_CBS436 | cds-NP_010934.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:186160-186825:- | gene-YER018C_CBS6412 | rna-NM_001178909.3_CBS6412 | cds-NP_010934.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:190946-191611:- | gene-YER018C_CBS6413 | rna-NM_001178909.3_CBS6413 | cds-NP_010934.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:189848-190513:- | gene-YER018C_CENPK1137D | rna-NM_001178909.3_CENPK1137D | cds-NP_010934.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:186619-187284:- | gene-YER018C_EthanolRed | rna-NM_001178909.3_EthanolRed | cds-NP_010934.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:186879-187544:- | gene-YER018C_FaliES1 | rna-NM_001178909.3_FaliES1 | cds-NP_010934.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000024.1:53502-54167:- | gene-YER018C_JAY291 | rna-NM_001178909.3_JAY291 | cds-NP_010934.3_JAY291 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:190042-190707:- | gene-YER018C_MUCL30387 | rna-NM_001178909.3_MUCL30387 | cds-NP_010934.3_MUCL30387 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:186318-186983:- | gene-YER018C_MUCL30388 | rna-NM_001178909.3_MUCL30388 | cds-NP_010934.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:184959-185624:- | gene-YER018C_MUCL39482 | rna-NM_001178909.3_MUCL39482 | cds-NP_010934.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:191074-191739:- | gene-YER018C_MUCL42920 | rna-NM_001178909.3_MUCL42920 | cds-NP_010934.3_MUCL42920 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:191958-192623:- | gene-YER018C_NCIM3186 | rna-NM_001178909.3_NCIM3186 | cds-NP_010934.3_NCIM3186 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:190031-190696:- | gene-YER018C_NCYC1407 | rna-NM_001178909.3_NCYC1407 | cds-NP_010934.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:194344-195009:- | gene-YER018C_PE2H3 | rna-NM_001178909.3_PE2H3 | cds-NP_010934.3_PE2H3 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:190243-190908:- | gene-YER018C_PE2H4 | rna-NM_001178909.3_PE2H4 | cds-NP_010934.3_PE2H4 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:191959-192624:- | gene-YER018C_S288C | rna-NM_001178909.3_S288C | cds-NP_010934.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:51060-51725:+ | gene-YER018C_SA1 | rna-NM_001178909.3_SA1 | cds-NP_010934.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:187650-188315:- | gene-YER018C_ThermosaccDry | rna-NM_001178909.3_ThermosaccDry | cds-NP_010934.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:186403-187068:- | gene-YER018C_VR1 | rna-NM_001178909.3_VR1 | cds-NP_010934.3_VR1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:184862-185527:- | gene-YER018C_ZTW1 | rna-NM_001178909.3_ZTW1 | cds-NP_010934.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:188628-189293:- | gene-YER018C_Sparadoxus | rna-NM_001178909.3_Sparadoxus | cds-NP_010934.3_Sparadoxus | 88.5 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |