Gene name: SPC24
Reference locus (S288C): YMR117C
Gene biotype: protein_coding
Description: Kinetochore protein SPC24; Component of the kinetochore-associated Ndc80 complex; involved in chromosome segregation, spindle checkpoint activity, and kinetochore clustering; evolutionarily conserved; other members include Ndc80p, Nuf2p, Spc24p, and Spc25p
Top 10 interactors (score): SPC25 (0.999); NUF2 (0.999); NDC80 (0.997); DSN1 (0.997); CNN1 (0.986); SPC105 (0.968); MTW1 (0.962); ASK1 (0.941); NSL1 (0.941); AME1 (0.916); MCM21 (0.899); OKP1 (0.887); CTF19 (0.865); CTF3 (0.845); CBF2 (0.835); CHL4 (0.826); CEP3 (0.819); MPS1 (0.813); MPS2 (0.802); SPC110 (0.799)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:539422-540063:- | gene-YMR117C_AKU4011 | rna-NM_001182617.1_AKU4011 | cds-NP_013835.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:2785-3426:+ | gene-YMR117C_BG1 | rna-NM_001182617.1_BG1 | cds-NP_013835.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:481608-482249:- | gene-YMR117C_Bruggeman | rna-NM_001182617.1_Bruggeman | cds-NP_013835.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:482825-483466:- | gene-YMR117C_CAT1 | rna-NM_001182617.1_CAT1 | cds-NP_013835.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:472865-473506:- | gene-YMR117C_CBS1585 | rna-NM_001182617.1_CBS1585 | cds-NP_013835.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:477781-478422:- | gene-YMR117C_CBS436 | rna-NM_001182617.1_CBS436 | cds-NP_013835.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:585472-586113:- | gene-YMR117C_CBS6412 | rna-NM_001182617.1_CBS6412 | cds-NP_013835.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:471626-472267:- | gene-YMR117C_CBS6413 | rna-NM_001182617.1_CBS6413 | cds-NP_013835.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:495774-496415:- | gene-YMR117C_CENPK1137D | rna-NM_001182617.1_CENPK1137D | cds-NP_013835.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:472044-472685:- | gene-YMR117C_EthanolRed | rna-NM_001182617.1_EthanolRed | cds-NP_013835.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:477364-478005:- | gene-YMR117C_FaliES1 | rna-NM_001182617.1_FaliES1 | cds-NP_013835.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000380.1:2666-3307:+ | gene-YMR117C_JAY291 | rna-NM_001182617.1_JAY291 | cds-NP_013835.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:478528-479169:- | gene-YMR117C_MUCL30387 | rna-NM_001182617.1_MUCL30387 | cds-NP_013835.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:482779-483420:- | gene-YMR117C_MUCL30388 | rna-NM_001182617.1_MUCL30388 | cds-NP_013835.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:472666-473307:- | gene-YMR117C_MUCL39482 | rna-NM_001182617.1_MUCL39482 | cds-NP_013835.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:479677-480318:- | gene-YMR117C_MUCL42920 | rna-NM_001182617.1_MUCL42920 | cds-NP_013835.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:501204-501845:- | gene-YMR117C_NCIM3186 | rna-NM_001182617.1_NCIM3186 | cds-NP_013835.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:472562-473203:- | gene-YMR117C_NCYC1407 | rna-NM_001182617.1_NCYC1407 | cds-NP_013835.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:478378-479019:- | gene-YMR117C_PE2H3 | rna-NM_001182617.1_PE2H3 | cds-NP_013835.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:484473-485114:- | gene-YMR117C_PE2H4 | rna-NM_001182617.1_PE2H4 | cds-NP_013835.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:501250-501891:- | gene-YMR117C_S288C | rna-NM_001182617.1_S288C | cds-NP_013835.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:69717-70358:+ | gene-YMR117C_SA1 | rna-NM_001182617.1_SA1 | cds-NP_013835.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:473223-473864:- | gene-YMR117C_ThermosaccDry | rna-NM_001182617.1_ThermosaccDry | cds-NP_013835.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:484963-485604:- | gene-YMR117C_VR1 | rna-NM_001182617.1_VR1 | cds-NP_013835.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:449272-449913:- | gene-YMR117C_ZTW1 | rna-NM_001182617.1_ZTW1 | cds-NP_013835.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:486297-486938:- | gene-YMR117C_Sparadoxus | rna-NM_001182617.1_Sparadoxus | cds-NP_013835.1_Sparadoxus | 88.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |