Gene name: SPC2
Reference locus (S288C): YML055W
Gene biotype: protein_coding
Description: Subunit of signal peptidase complex; complex catalyzes cleavage of N-terminal signal sequences of proteins targeted to the secretory pathway; homologous to mammalian SPC25; other members of the complex are Spc1p, Spc1p, and Sec11p
Top 10 interactors (score): SEC11 (0.999); SPC1 (0.998); SPC3 (0.996); SBH1 (0.821); SEC62 (0.793); SPC25 (0.789); SBH2 (0.78); YLR184W (0.765); SSS1 (0.751); YNL217W (0.749); KAR2 (0.738); YBL029W (0.712); YOR034C-A (0.712); HMT1 (0.705); BSC6 (0.7); YGR161W-C (0.694); YIL014C-A (0.692); DSC3 (0.691); STB6 (0.69); SEC63 (0.677)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:158508-159044:+ | gene-YML055W_AKU4011 | rna-NM_001182413.1_AKU4011 | cds-NP_013657.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:317093-317629:- | gene-YML055W_BG1 | rna-NM_001182413.1_BG1 | cds-NP_013657.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:164631-165167:+ | gene-YML055W_Bruggeman | rna-NM_001182413.1_Bruggeman | cds-NP_013657.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:167544-168080:+ | gene-YML055W_CAT1 | rna-NM_001182413.1_CAT1 | cds-NP_013657.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:158511-159047:+ | gene-YML055W_CBS1585 | rna-NM_001182413.1_CBS1585 | cds-NP_013657.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:164426-164962:+ | gene-YML055W_CBS436 | rna-NM_001182413.1_CBS436 | cds-NP_013657.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:272273-272809:+ | gene-YML055W_CBS6412 | rna-NM_001182413.1_CBS6412 | cds-NP_013657.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:157663-158199:+ | gene-YML055W_CBS6413 | rna-NM_001182413.1_CBS6413 | cds-NP_013657.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:159493-160029:+ | gene-YML055W_CENPK1137D | rna-NM_001182413.1_CENPK1137D | cds-NP_013657.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:158807-159343:+ | gene-YML055W_EthanolRed | rna-NM_001182413.1_EthanolRed | cds-NP_013657.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:159288-159824:+ | gene-YML055W_FaliES1 | rna-NM_001182413.1_FaliES1 | cds-NP_013657.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000056.1:1883-2419:+ | gene-YML055W_JAY291 | rna-NM_001182413.1_JAY291 | cds-NP_013657.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:163165-163701:+ | gene-YML055W_MUCL30387 | rna-NM_001182413.1_MUCL30387 | cds-NP_013657.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:166357-166893:+ | gene-YML055W_MUCL30388 | rna-NM_001182413.1_MUCL30388 | cds-NP_013657.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:158545-159081:+ | gene-YML055W_MUCL39482 | rna-NM_001182413.1_MUCL39482 | cds-NP_013657.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:164350-164886:+ | gene-YML055W_MUCL42920 | rna-NM_001182413.1_MUCL42920 | cds-NP_013657.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:164744-165280:+ | gene-YML055W_NCIM3186 | rna-NM_001182413.1_NCIM3186 | cds-NP_013657.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:159338-159874:+ | gene-YML055W_NCYC1407 | rna-NM_001182413.1_NCYC1407 | cds-NP_013657.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:164749-165285:+ | gene-YML055W_PE2H3 | rna-NM_001182413.1_PE2H3 | cds-NP_013657.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:164613-165149:+ | gene-YML055W_PE2H4 | rna-NM_001182413.1_PE2H4 | cds-NP_013657.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:164790-165326:+ | gene-YML055W_S288C | rna-NM_001182413.1_S288C | cds-NP_013657.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000041.1:18800-19336:- | gene-YML055W_SA1 | rna-NM_001182413.1_SA1 | cds-NP_013657.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:158603-159139:+ | gene-YML055W_ThermosaccDry | rna-NM_001182413.1_ThermosaccDry | cds-NP_013657.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:162935-163471:+ | gene-YML055W_VR1 | rna-NM_001182413.1_VR1 | cds-NP_013657.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:138132-138668:+ | gene-YML055W_ZTW1 | rna-NM_001182413.1_ZTW1 | cds-NP_013657.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:169778-170314:+ | gene-YML055W_Sparadoxus | rna-NM_001182413.1_Sparadoxus | cds-NP_013657.1_Sparadoxus | 87.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |