Gene name: SPB1
Reference locus (S288C): YCL054W
Gene biotype: protein_coding
Description: 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase; AdoMet-dependent methyltransferase; involved in rRNA processing and 60S ribosomal subunit maturation; methylates G2922 in the tRNA docking site of the large subunit rRNA and in the absence of snR52, U2921; suppressor of PAB1 mutants
Top 10 interactors (score): YTM1 (0.999); ERB1 (0.999); NOP15 (0.999); NOG2 (0.999); HAS1 (0.999); RRP12 (0.999); NOP1 (0.999); NOP2 (0.999); NSA2 (0.999); NOP12 (0.999); RPF2 (0.999); RPF1 (0.999); RRS1 (0.999); NUG1 (0.999); EBP2 (0.999); NOP7 (0.999); NIP7 (0.999); MRT4 (0.999); NOC3 (0.999); SSF1 (0.999)
Homologues (species, bitscore): FTSJ3 (Homo sapiens, 489.6); Ftsj3 (Mus musculus, 495.4); ftsj (Danio rerio, 500.0); FTSJ3 (Xenopus tropicalis, 441.8); CG8939 (Drosophila melanogaster, 438.7); H06I04.3 (Caenorhabditis elegans, 415.6); AT4G25730 (Arabidopsis thaliana, 391.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:32730-35255:+ | gene-YCL054W_AKU4011 | rna-NM_001178698.1_AKU4011 | cds-NP_009877.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000086.1:10571-13096:- | gene-YCL054W_BG1 | rna-NM_001178698.1_BG1 | cds-NP_009877.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:20596-23121:+ | gene-YCL054W_Bruggeman | rna-NM_001178698.1_Bruggeman | cds-NP_009877.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:32602-35127:+ | gene-YCL054W_CAT1 | rna-NM_001178698.1_CAT1 | cds-NP_009877.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:33413-35938:+ | gene-YCL054W_CBS1585 | rna-NM_001178698.1_CBS1585 | cds-NP_009877.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:31972-34497:+ | gene-YCL054W_CBS436 | rna-NM_001178698.1_CBS436 | cds-NP_009877.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:21189-23714:+ | gene-YCL054W_CBS6412 | rna-NM_001178698.1_CBS6412 | cds-NP_009877.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:32207-34732:+ | gene-YCL054W_CBS6413 | rna-NM_001178698.1_CBS6413 | cds-NP_009877.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:31023-33548:+ | gene-YCL054W_CENPK1137D | rna-NM_001178698.1_CENPK1137D | cds-NP_009877.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:30963-33488:+ | gene-YCL054W_EthanolRed | rna-NM_001178698.1_EthanolRed | cds-NP_009877.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:31726-34251:+ | gene-YCL054W_FaliES1 | rna-NM_001178698.1_FaliES1 | cds-NP_009877.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000225.1:50087-52612:- | gene-YCL054W_JAY291 | rna-NM_001178698.1_JAY291 | cds-NP_009877.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:19199-21724:+ | gene-YCL054W_MUCL30387 | rna-NM_001178698.1_MUCL30387 | cds-NP_009877.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:19458-21983:+ | gene-YCL054W_MUCL30388 | rna-NM_001178698.1_MUCL30388 | cds-NP_009877.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:33800-36325:+ | gene-YCL054W_MUCL39482 | rna-NM_001178698.1_MUCL39482 | cds-NP_009877.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:19990-22515:+ | gene-YCL054W_MUCL42920 | rna-NM_001178698.1_MUCL42920 | cds-NP_009877.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:31081-33606:+ | gene-YCL054W_NCIM3186 | rna-NM_001178698.1_NCIM3186 | cds-NP_009877.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:34122-36647:+ | gene-YCL054W_NCYC1407 | rna-NM_001178698.1_NCYC1407 | cds-NP_009877.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:31895-34420:+ | gene-YCL054W_PE2H3 | rna-NM_001178698.1_PE2H3 | cds-NP_009877.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:31852-34377:+ | gene-YCL054W_PE2H4 | rna-NM_001178698.1_PE2H4 | cds-NP_009877.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:31449-33974:+ | gene-YCL054W_S288C | rna-NM_001178698.1_S288C | cds-NP_009877.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000061.1:18576-21101:+ | gene-YCL054W_SA1 | rna-NM_001178698.1_SA1 | cds-NP_009877.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:32044-34569:+ | gene-YCL054W_ThermosaccDry | rna-NM_001178698.1_ThermosaccDry | cds-NP_009877.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:38380-40905:+ | gene-YCL054W_VR1 | rna-NM_001178698.1_VR1 | cds-NP_009877.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:32270-34795:+ | gene-YCL054W_ZTW1 | rna-NM_001178698.1_ZTW1 | cds-NP_009877.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:61918-64443:+ | gene-YCL054W_Sparadoxus | rna-NM_001178698.1_Sparadoxus | cds-NP_009877.1_Sparadoxus | 92.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |