Gene name: SOM1
Reference locus (S288C): YEL059C-A
Gene biotype: protein_coding
Description: Protein SOM1, mitochondrial; Subunit of the mitochondrial inner membrane peptidase (IMP); IMP is required for maturation of mitochondrial proteins of the intermembrane space; Som1p facilitates cleavage of a subset of substrates; contains twin cysteine-x9-cysteine motifs
Top 10 interactors (score): COX20 (0.971); IMP1 (0.838); YMR035W (0.72); COX18 (0.716); TOM6 (0.696); COX11 (0.696); CBT1 (0.694); SCO2 (0.691); COX23 (0.67); PNT1 (0.619); OXA1 (0.618); MIA40 (0.617); MBA1 (0.617); MSS2 (0.615); HHY1 (0.594); HOT13 (0.575); ATP15 (0.575); COX8 (0.574); TPC1 (0.573); COX19 (0.573)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:36808-37032:- | gene-YEL059C-A_AKU4011 | rna-NM_001180854.3_AKU4011 | cds-NP_058154.3_AKU4011 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000075.1:43485-43709:+ | gene-YEL059C-A_BG1 | rna-NM_001180854.3_BG1 | cds-NP_058154.3_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:40315-40539:- | gene-YEL059C-A_Bruggeman | rna-NM_001180854.3_Bruggeman | cds-NP_058154.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:38749-38973:- | gene-YEL059C-A_CAT1 | rna-NM_001180854.3_CAT1 | cds-NP_058154.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:36751-36975:- | gene-YEL059C-A_CBS1585 | rna-NM_001180854.3_CBS1585 | cds-NP_058154.3_CBS1585 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:37807-38031:- | gene-YEL059C-A_CBS436 | rna-NM_001180854.3_CBS436 | cds-NP_058154.3_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:37003-37227:- | gene-YEL059C-A_CBS6412 | rna-NM_001180854.3_CBS6412 | cds-NP_058154.3_CBS6412 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:41649-41873:- | gene-YEL059C-A_CBS6413 | rna-NM_001180854.3_CBS6413 | cds-NP_058154.3_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:40238-40462:- | gene-YEL059C-A_CENPK1137D | rna-NM_001180854.3_CENPK1137D | cds-NP_058154.3_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:36566-36790:- | gene-YEL059C-A_EthanolRed | rna-NM_001180854.3_EthanolRed | cds-NP_058154.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:36829-37053:- | gene-YEL059C-A_FaliES1 | rna-NM_001180854.3_FaliES1 | cds-NP_058154.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000427.1:21016-21240:+ | gene-YEL059C-A_JAY291 | rna-NM_001180854.3_JAY291 | cds-NP_058154.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:40756-40980:- | gene-YEL059C-A_MUCL30387 | rna-NM_001180854.3_MUCL30387 | cds-NP_058154.3_MUCL30387 | 98.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:36866-37090:- | gene-YEL059C-A_MUCL30388 | rna-NM_001180854.3_MUCL30388 | cds-NP_058154.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:36118-36342:- | gene-YEL059C-A_MUCL39482 | rna-NM_001180854.3_MUCL39482 | cds-NP_058154.3_MUCL39482 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:40749-40973:- | gene-YEL059C-A_MUCL42920 | rna-NM_001180854.3_MUCL42920 | cds-NP_058154.3_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:42399-42623:- | gene-YEL059C-A_NCIM3186 | rna-NM_001180854.3_NCIM3186 | cds-NP_058154.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:41217-41441:- | gene-YEL059C-A_NCYC1407 | rna-NM_001180854.3_NCYC1407 | cds-NP_058154.3_NCYC1407 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:45213-45437:- | gene-YEL059C-A_PE2H3 | rna-NM_001180854.3_PE2H3 | cds-NP_058154.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:41138-41362:- | gene-YEL059C-A_PE2H4 | rna-NM_001180854.3_PE2H4 | cds-NP_058154.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:42400-42624:- | gene-YEL059C-A_S288C | rna-NM_001180854.3_S288C | cds-NP_058154.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000053.1:44282-44506:+ | gene-YEL059C-A_SA1 | rna-NM_001180854.3_SA1 | cds-NP_058154.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:37229-37453:- | gene-YEL059C-A_ThermosaccDry | rna-NM_001180854.3_ThermosaccDry | cds-NP_058154.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:36430-36654:- | gene-YEL059C-A_VR1 | rna-NM_001180854.3_VR1 | cds-NP_058154.3_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:36166-36390:- | gene-YEL059C-A_ZTW1 | rna-NM_001180854.3_ZTW1 | cds-NP_058154.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:40517-40741:- | gene-YEL059C-A_Sparadoxus | rna-NM_001180854.3_Sparadoxus | cds-NP_058154.3_Sparadoxus | 91.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |