Gene name: SOK2
Reference locus (S288C): YMR016C
Gene biotype: protein_coding
Description: Nuclear protein that negatively regulates pseudohyphal differentiation; plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; relocalizes to the cytosol in response to hypoxia; SOK2 has a paralog, PHD1, that arose from the whole genome duplication
Top 10 interactors (score): TPK2 (0.94); TPK1 (0.914); TPK3 (0.911); TEC1 (0.907); MSN2 (0.883); YAP6 (0.857); NRG1 (0.831); SKO1 (0.819); STE12 (0.806); FLO11 (0.787); CIN5 (0.787); ROX1 (0.781); YAK1 (0.772); EFG1 (0.757); RIM101 (0.748); SWI4 (0.746); TUP1 (0.732); UME6 (0.73); ASH1 (0.722); SKN7 (0.716)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:352860-355190:- | gene-YMR016C_AKU4011 | rna-NM_001182512.1_AKU4011 | cds-NP_013729.1_AKU4011 | 98.1 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:187657-190011:+ | gene-YMR016C_BG1 | rna-NM_001182512.1_BG1 | cds-NP_013729.1_BG1 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:292803-295133:- | gene-YMR016C_Bruggeman | rna-NM_001182512.1_Bruggeman | cds-NP_013729.1_Bruggeman | 98.5 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:295296-297653:- | gene-YMR016C_CAT1 | rna-NM_001182512.1_CAT1 | cds-NP_013729.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:285801-288131:- | gene-YMR016C_CBS1585 | rna-NM_001182512.1_CBS1585 | cds-NP_013729.1_CBS1585 | 98.1 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:291324-293681:- | gene-YMR016C_CBS436 | rna-NM_001182512.1_CBS436 | cds-NP_013729.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:399205-401535:- | gene-YMR016C_CBS6412 | rna-NM_001182512.1_CBS6412 | cds-NP_013729.1_CBS6412 | 98.1 | 98.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:285057-287387:- | gene-YMR016C_CBS6413 | rna-NM_001182512.1_CBS6413 | cds-NP_013729.1_CBS6413 | 98.1 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:297967-300324:- | gene-YMR016C_CENPK1137D | rna-NM_001182512.1_CENPK1137D | cds-NP_013729.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:285608-287962:- | gene-YMR016C_EthanolRed | rna-NM_001182512.1_EthanolRed | cds-NP_013729.1_EthanolRed | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:288791-291145:- | gene-YMR016C_FaliES1 | rna-NM_001182512.1_FaliES1 | cds-NP_013729.1_FaliES1 | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:145788-148142:+ | gene-YMR016C_JAY291 | rna-NM_001182512.1_JAY291 | cds-NP_013729.1_JAY291 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:290514-292844:- | gene-YMR016C_MUCL30387 | rna-NM_001182512.1_MUCL30387 | cds-NP_013729.1_MUCL30387 | 98.6 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:295188-297518:- | gene-YMR016C_MUCL30388 | rna-NM_001182512.1_MUCL30388 | cds-NP_013729.1_MUCL30388 | 98.2 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:286086-288416:- | gene-YMR016C_MUCL39482 | rna-NM_001182512.1_MUCL39482 | cds-NP_013729.1_MUCL39482 | 98.1 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:291871-294225:- | gene-YMR016C_MUCL42920 | rna-NM_001182512.1_MUCL42920 | cds-NP_013729.1_MUCL42920 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:303190-305547:- | gene-YMR016C_NCIM3186 | rna-NM_001182512.1_NCIM3186 | cds-NP_013729.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:286003-288333:- | gene-YMR016C_NCYC1407 | rna-NM_001182512.1_NCYC1407 | cds-NP_013729.1_NCYC1407 | 98.1 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:291930-294284:- | gene-YMR016C_PE2H3 | rna-NM_001182512.1_PE2H3 | cds-NP_013729.1_PE2H3 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:298025-300379:- | gene-YMR016C_PE2H4 | rna-NM_001182512.1_PE2H4 | cds-NP_013729.1_PE2H4 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:303236-305593:- | gene-YMR016C_S288C | rna-NM_001182512.1_S288C | cds-NP_013729.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:232673-235030:+ | gene-YMR016C_SA1 | rna-NM_001182512.1_SA1 | cds-NP_013729.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:285860-288214:- | gene-YMR016C_ThermosaccDry | rna-NM_001182512.1_ThermosaccDry | cds-NP_013729.1_ThermosaccDry | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:289814-292171:- | gene-YMR016C_VR1 | rna-NM_001182512.1_VR1 | cds-NP_013729.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:264907-267237:- | gene-YMR016C_ZTW1 | rna-NM_001182512.1_ZTW1 | cds-NP_013729.1_ZTW1 | 98.2 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:298752-301106:- | gene-YMR016C_Sparadoxus | rna-NM_001182512.1_Sparadoxus | cds-NP_013729.1_Sparadoxus | 87.0 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |