Gene name: SOK1
Reference locus (S288C): YDR006C
Gene biotype: protein_coding
Description: Protein of unknown function; overexpression suppresses the growth defect of mutants lacking protein kinase A activity; involved in cAMP-mediated signaling; localized to the nucleus; similar to the mouse testis-specific protein PBS13
Top 10 interactors (score): UBR1 (0.85); CUP9 (0.817); EFG1 (0.694); MBR1 (0.682); TAF11 (0.681); TPK1 (0.681); FIG4 (0.647); TPK2 (0.62); TPK3 (0.592); NRG1 (0.581); CYR1 (0.58); SOK2 (0.561); RAS1 (0.526); TMA19 (0.489); RIM1 (0.481); ZAP1 (0.481); RPN11 (0.474); YNR021W (0.473); ENT2 (0.465); ENT1 (0.465)
Homologues (species, bitscore): TCP11L2 (Homo sapiens, 74.3); Tcp11x2 (Mus musculus, 79.0); tcp11l1 (Danio rerio, 70.1); tcp11l2 (Xenopus tropicalis, 77.0); CG16721 (Drosophila melanogaster, 65.1); M05D6.2 (Caenorhabditis elegans, 54.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:443793-446498:- | gene-YDR006C_AKU4011 | rna-NM_001180314.3_AKU4011 | cds-NP_010289.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:102653-105358:+ | gene-YDR006C_BG1 | rna-NM_001180314.3_BG1 | cds-NP_010289.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:464399-467104:- | gene-YDR006C_Bruggeman | rna-NM_001180314.3_Bruggeman | cds-NP_010289.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:457244-459949:- | gene-YDR006C_CAT1 | rna-NM_001180314.3_CAT1 | cds-NP_010289.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:441005-443710:- | gene-YDR006C_CBS1585 | rna-NM_001180314.3_CBS1585 | cds-NP_010289.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:457774-460479:- | gene-YDR006C_CBS436 | rna-NM_001180314.3_CBS436 | cds-NP_010289.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:438252-440957:- | gene-YDR006C_CBS6412 | rna-NM_001180314.3_CBS6412 | cds-NP_010289.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:459943-462648:- | gene-YDR006C_CBS6413 | rna-NM_001180314.3_CBS6413 | cds-NP_010289.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:457405-460110:- | gene-YDR006C_CENPK1137D | rna-NM_001180314.3_CENPK1137D | cds-NP_010289.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:452624-455329:- | gene-YDR006C_EthanolRed | rna-NM_001180314.3_EthanolRed | cds-NP_010289.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:458795-461500:- | gene-YDR006C_FaliES1 | rna-NM_001180314.3_FaliES1 | cds-NP_010289.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000442.1:10559-13264:+ | gene-YDR006C_JAY291 | rna-NM_001180314.3_JAY291 | cds-NP_010289.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:458272-460977:- | gene-YDR006C_MUCL30387 | rna-NM_001180314.3_MUCL30387 | cds-NP_010289.3_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:448732-451437:- | gene-YDR006C_MUCL30388 | rna-NM_001180314.3_MUCL30388 | cds-NP_010289.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:442374-445079:- | gene-YDR006C_MUCL39482 | rna-NM_001180314.3_MUCL39482 | cds-NP_010289.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:363805-366510:- | gene-YDR006C_MUCL42920 | rna-NM_001180314.3_MUCL42920 | cds-NP_010289.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:458465-461170:- | gene-YDR006C_NCIM3186 | rna-NM_001180314.3_NCIM3186 | cds-NP_010289.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:441296-444001:- | gene-YDR006C_NCYC1407 | rna-NM_001180314.3_NCYC1407 | cds-NP_010289.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:456911-459616:- | gene-YDR006C_PE2H3 | rna-NM_001180314.3_PE2H3 | cds-NP_010289.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:456216-458921:- | gene-YDR006C_PE2H4 | rna-NM_001180314.3_PE2H4 | cds-NP_010289.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:458542-461247:- | gene-YDR006C_S288C | rna-NM_001180314.3_S288C | cds-NP_010289.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000099.1:10720-13425:+ | gene-YDR006C_SA1 | rna-NM_001180314.3_SA1 | cds-NP_010289.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:458274-460979:- | gene-YDR006C_ThermosaccDry | rna-NM_001180314.3_ThermosaccDry | cds-NP_010289.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:462714-465419:- | gene-YDR006C_VR1 | rna-NM_001180314.3_VR1 | cds-NP_010289.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:456170-458875:- | gene-YDR006C_ZTW1 | rna-NM_001180314.3_ZTW1 | cds-NP_010289.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:460526-463231:- | gene-YDR006C_Sparadoxus | rna-NM_001180314.3_Sparadoxus | cds-NP_010289.3_Sparadoxus | 92.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |