Gene name: SOH1
Reference locus (S288C): YGL127C
Gene biotype: protein_coding
Description: Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; involved in telomere maintenance; conserved with other metazoan MED31 subunits
Top 10 interactors (score): SRB7 (0.999); MED6 (0.999); SRB2 (0.999); MED7 (0.999); RGR1 (0.999); SRB4 (0.999); MED8 (0.999); NUT2 (0.999); SRB6 (0.998); MED4 (0.998); CSE2 (0.998); SRB5 (0.998); GAL11 (0.996); SSN3 (0.996); MED1 (0.996); MED11 (0.993); ROX3 (0.993); SIN4 (0.993); MED2 (0.989); SSN2 (0.988)
Homologues (species, bitscore): MED31 (Homo sapiens, 66.2); Med31 (Mus musculus, 65.5); med31 (Danio rerio, 62.0); med31 (Xenopus tropicalis, 67.0); MED31 (Drosophila melanogaster, 65.1); mdt-31 (Caenorhabditis elegans, 69.7); MED31 (Arabidopsis thaliana, 65.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:273211-273594:- | gene-YGL127C_AKU4011 | rna-NM_001180992.1_AKU4011 | cds-NP_011388.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:131589-131972:+ | gene-YGL127C_BG1 | rna-NM_001180992.1_BG1 | cds-NP_011388.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:275912-276295:- | gene-YGL127C_Bruggeman | rna-NM_001180992.1_Bruggeman | cds-NP_011388.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:271495-271878:- | gene-YGL127C_CAT1 | rna-NM_001180992.1_CAT1 | cds-NP_011388.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:276540-276923:- | gene-YGL127C_CBS1585 | rna-NM_001180992.1_CBS1585 | cds-NP_011388.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:271445-271828:- | gene-YGL127C_CBS436 | rna-NM_001180992.1_CBS436 | cds-NP_011388.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:262179-262562:- | gene-YGL127C_CBS6412 | rna-NM_001180992.1_CBS6412 | cds-NP_011388.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:271399-271782:- | gene-YGL127C_CBS6413 | rna-NM_001180992.1_CBS6413 | cds-NP_011388.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:270651-271034:- | gene-YGL127C_CENPK1137D | rna-NM_001180992.1_CENPK1137D | cds-NP_011388.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:262923-263306:- | gene-YGL127C_EthanolRed | rna-NM_001180992.1_EthanolRed | cds-NP_011388.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:264879-265262:- | gene-YGL127C_FaliES1 | rna-NM_001180992.1_FaliES1 | cds-NP_011388.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000408.1:3931-4314:+ | gene-YGL127C_JAY291 | rna-NM_001180992.1_JAY291 | cds-NP_011388.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:272882-273265:- | gene-YGL127C_MUCL30387 | rna-NM_001180992.1_MUCL30387 | cds-NP_011388.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:276000-276383:- | gene-YGL127C_MUCL30388 | rna-NM_001180992.1_MUCL30388 | cds-NP_011388.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:273624-274007:- | gene-YGL127C_MUCL39482 | rna-NM_001180992.1_MUCL39482 | cds-NP_011388.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:276874-277257:- | gene-YGL127C_MUCL42920 | rna-NM_001180992.1_MUCL42920 | cds-NP_011388.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:270392-270775:- | gene-YGL127C_NCIM3186 | rna-NM_001180992.1_NCIM3186 | cds-NP_011388.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:265116-265499:- | gene-YGL127C_NCYC1407 | rna-NM_001180992.1_NCYC1407 | cds-NP_011388.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:266502-266885:- | gene-YGL127C_PE2H3 | rna-NM_001180992.1_PE2H3 | cds-NP_011388.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:271500-271883:- | gene-YGL127C_PE2H4 | rna-NM_001180992.1_PE2H4 | cds-NP_011388.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:270392-270775:- | gene-YGL127C_S288C | rna-NM_001180992.1_S288C | cds-NP_011388.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000064.1:15279-15662:- | gene-YGL127C_SA1 | rna-NM_001180992.1_SA1 | cds-NP_011388.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:265108-265491:- | gene-YGL127C_ThermosaccDry | rna-NM_001180992.1_ThermosaccDry | cds-NP_011388.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:375232-375615:- | gene-YGL127C_VR1 | rna-NM_001180992.1_VR1 | cds-NP_011388.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:262687-263070:- | gene-YGL127C_ZTW1 | rna-NM_001180992.1_ZTW1 | cds-NP_011388.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:268700-269083:- | gene-YGL127C_Sparadoxus | rna-NM_001180992.1_Sparadoxus | cds-NP_011388.1_Sparadoxus | 92.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |