Gene name: SOF1
Reference locus (S288C): YLL011W
Gene biotype: protein_coding
Description: Protein required for biogenesis of 40S (small) ribosomal subunit; has similarity to the beta subunit of trimeric G-proteins and the splicing factor Prp4p; essential gene; Belongs to the WD repeat DCAF13/WDSOF1 family
Top 10 interactors (score): RRP5 (0.999); DIM1 (0.999); RRP7 (0.999); KRR1 (0.999); FCF2 (0.999); BUD21 (0.999); FCF1 (0.999); ENP1 (0.999); SAS10 (0.999); BFR2 (0.999); BMS1 (0.999); UTP11 (0.999); UTP6 (0.999); UTP14 (0.999); EMG1 (0.999); ECM16 (0.999); UTP22 (0.999); KRE33 (0.999); MPP10 (0.999); UTP4 (0.999)
Homologues (species, bitscore): DCAF13 (Homo sapiens, 431.0); Dcaf13 (Mus musculus, 436.0); dcaf13 (Danio rerio, 440.3); dcaf13 (Xenopus tropicalis, 380.2); CG7275 (Drosophila melanogaster, 398.3); ZK430.7 (Caenorhabditis elegans, 296.2); AT4G28450 (Arabidopsis thaliana, 406.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:115259-116728:+ | gene-YLL011W_AKU4011 | rna-NM_001181831.1_AKU4011 | cds-NP_013090.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:78741-80210:+ | gene-YLL011W_BG1 | rna-NM_001181831.1_BG1 | cds-NP_013090.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:125384-126853:+ | gene-YLL011W_Bruggeman | rna-NM_001181831.1_Bruggeman | cds-NP_013090.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:125941-127410:+ | gene-YLL011W_CAT1 | rna-NM_001181831.1_CAT1 | cds-NP_013090.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:122857-124326:+ | gene-YLL011W_CBS1585 | rna-NM_001181831.1_CBS1585 | cds-NP_013090.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:113250-114719:+ | gene-YLL011W_CBS436 | rna-NM_001181831.1_CBS436 | cds-NP_013090.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:121621-123090:+ | gene-YLL011W_CBS6412 | rna-NM_001181831.1_CBS6412 | cds-NP_013090.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:123119-124588:+ | gene-YLL011W_CBS6413 | rna-NM_001181831.1_CBS6413 | cds-NP_013090.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:112585-114054:+ | gene-YLL011W_CENPK1137D | rna-NM_001181831.1_CENPK1137D | cds-NP_013090.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:115301-116770:+ | gene-YLL011W_EthanolRed | rna-NM_001181831.1_EthanolRed | cds-NP_013090.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:114873-116342:+ | gene-YLL011W_FaliES1 | rna-NM_001181831.1_FaliES1 | cds-NP_013090.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000083.1:39026-40495:- | gene-YLL011W_JAY291 | rna-NM_001181831.1_JAY291 | cds-NP_013090.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:122981-124450:+ | gene-YLL011W_MUCL30387 | rna-NM_001181831.1_MUCL30387 | cds-NP_013090.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:127212-128681:+ | gene-YLL011W_MUCL30388 | rna-NM_001181831.1_MUCL30388 | cds-NP_013090.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:123327-124796:+ | gene-YLL011W_MUCL39482 | rna-NM_001181831.1_MUCL39482 | cds-NP_013090.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:123016-124485:+ | gene-YLL011W_MUCL42920 | rna-NM_001181831.1_MUCL42920 | cds-NP_013090.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:127497-128966:+ | gene-YLL011W_NCIM3186 | rna-NM_001181831.1_NCIM3186 | cds-NP_013090.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:114934-116403:+ | gene-YLL011W_NCYC1407 | rna-NM_001181831.1_NCYC1407 | cds-NP_013090.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:121290-122759:+ | gene-YLL011W_PE2H3 | rna-NM_001181831.1_PE2H3 | cds-NP_013090.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:121031-122500:+ | gene-YLL011W_PE2H4 | rna-NM_001181831.1_PE2H4 | cds-NP_013090.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:127523-128992:+ | gene-YLL011W_S288C | rna-NM_001181831.1_S288C | cds-NP_013090.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000062.1:30486-31955:+ | gene-YLL011W_SA1 | rna-NM_001181831.1_SA1 | cds-NP_013090.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:115378-116847:+ | gene-YLL011W_ThermosaccDry | rna-NM_001181831.1_ThermosaccDry | cds-NP_013090.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:129003-130472:+ | gene-YLL011W_VR1 | rna-NM_001181831.1_VR1 | cds-NP_013090.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:114696-116165:+ | gene-YLL011W_ZTW1 | rna-NM_001181831.1_ZTW1 | cds-NP_013090.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:123136-124605:+ | gene-YLL011W_Sparadoxus | rna-NM_001181831.1_Sparadoxus | cds-NP_013090.1_Sparadoxus | 92.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |